miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46775_miR808:micropc
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 66
Query: 61 taacatcaatatgaatgtgggaaatg 86
||||||||||||||||||||||||||
Sbjct: 67 taacatcaatatgaatgtgggaaatg 92
>45995_miR446:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 60
Query: 61 taacatcaatatgaatgtgggaaatg 86
||||||||||||||||||||||||||
Sbjct: 61 taacatcaatatgaatgtgggaaatg 86
>45913_miR809:micropc
Length = 100
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 67
Query: 61 taacatcaatatgaatgtgggaaatg 86
||||||||||||||||||||||||||
Sbjct: 68 taacatcaatatgaatgtgggaaatg 93
>45176_miR446:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattttagattcat 60
Query: 61 taacatcaatatgaatgtgggaaatg 86
||||||||||||||||||||||||||
Sbjct: 61 taacatcaatatgaatgtgggaaatg 86
>46589_miR809:micropc
Length = 100
Score = 81.8 bits (41), Expect = 7e-17
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 20 tgatgttaataaatctagatagatatata-ttttagattcattaacatcaatatgaa 75
||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 26 tgatgttaataaatctagatagatatatatttttagattcattaatatcgatatgaa 82
>46801_miR809:micropc
Length = 110
Score = 79.8 bits (40), Expect = 3e-16
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 22 atgttaataaatctagatagatatatat-tttagattcattaacatcaatat 72
|||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 28 atgttaatgaatctagatagatatatatgtttagattcattaacatcaatat 79
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 19 ttgatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatg 77
||||||||||| |||||| | | |||||| | | ||||||||||||||| ||||||||||
Sbjct: 76 ttgatgttaatgaatctaaacatatatatctatctagattcattaacattaatatgaatg 17
Query: 78 tgggaaatg 86
|||||||||
Sbjct: 16 tgggaaatg 8
>45708_miR809:micropc
Length = 100
Score = 75.8 bits (38), Expect = 4e-15
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatat-tttagattca 59
|||||||| ||||||||| ||| ||||| ||||||||||||||||||| | ||||||||
Sbjct: 8 catttttcatattcatatt-gatattaatgaatctagatagatatatatgtctagattca 66
Query: 60 ttaacatcaatatgaatgtgggaaat 85
||| ||||||||| |||||| |||||
Sbjct: 67 ttagcatcaatataaatgtgagaaat 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 19 ttgatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaat 76
|||||| |||| |||||||| | |||||| | | |||||||||||| ||||||||||||
Sbjct: 76 ttgatgctaatgaatctagacatatatatctatctagattcattaatatcaatatgaat 18
>45522_miR809:micropc
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 19 ttgatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatg 77
||||||||||| |||||||||||||| |||| | ||||||||||||||||| || |||||
Sbjct: 76 ttgatgttaatgaatctagatagatacatatgtctagattcattaacatcattacgaatg 17
Query: 78 tgggaaatg 86
||| |||||
Sbjct: 16 tggaaaatg 8
Score = 56.0 bits (28), Expect = 4e-09
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 20 tgatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatgt 78
|||||||||| |||||||| | || ||| | | |||||||||||||||||| | ||||||
Sbjct: 26 tgatgttaatgaatctagacatatgtatctatctagattcattaacatcaacacgaatgt 85
Query: 79 gggaaatg 86
||||||||
Sbjct: 86 gggaaatg 93
>46637_miR446:micropc
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 19 ttgatgttaataaatctagatagatatatat-tttagattcattaacatcaatatgaa 75
||||||||||| ||||||| ||||||||||| | ||||||||||||||| ||||||||
Sbjct: 65 ttgatgttaatgaatctagctagatatatatgtctagattcattaacattaatatgaa 8
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 52 tagattcattaacatcaatatgaatgtgggaaa 84
||||||||||||||||||||||||| |||||||
Sbjct: 48 tagattcattaacatcaatatgaatatgggaaa 80
>46833_miR446:micropc
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 1 catttttcgcattcatatttgatgttaataaatctagatagatatatattt-tagattca 59
|||||| | |||||||||| ||||||||| ||| ||||||||||| ||| | ||||||||
Sbjct: 81 cattttccacattcatatt-gatgttaatgaatttagatagatatgtatgtctagattca 23
Query: 60 ttaacatcaatat 72
|||||||||||||
Sbjct: 22 ttaacatcaatat 10
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 19 ttgatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatg 77
||||||||||| |||||||| | | |||| | | || |||||||||||||||||||||||
Sbjct: 13 ttgatgttaatgaatctagacatacatatctatctaaattcattaacatcaatatgaatg 72
Query: 78 tgggaaatg 86
||| |||||
Sbjct: 73 tggaaaatg 81
>46318_miR446:micropc
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 20 tgatgttaataaatctagatagatatatat-tttagattcattaacatcaatatgaatgt 78
|||||||||| |||||| |||||||||||| | |||||| |||||| ||||||||||| |
Sbjct: 19 tgatgttaatgaatctatatagatatatatgtctagatttattaacgtcaatatgaatat 78
Query: 79 gggaaatg 86
|||||||
Sbjct: 79 aggaaatg 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 19 ttgatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatg 77
|||| ||||||||||||||| | |||||| | | ||||||||||||||||| ||| |||
Sbjct: 69 ttgacgttaataaatctagacatatatatctatatagattcattaacatcattataaata 10
Query: 78 tgggaaatg 86
|||||||||
Sbjct: 9 tgggaaatg 1
>46080_miR809:micropc
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 32 atctagatagatatatattt-tagattcattaacatcaatatgaatgtgggaaatg 86
|||||||||||||||||| | || |||||||| |||||||||||||||| ||||||
Sbjct: 37 atctagatagatatatatgtctatattcattaccatcaatatgaatgtgagaaatg 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 64 catcaatatgaatgtgggaaat 85
||||||||||||||||||||||
Sbjct: 30 catcaatatgaatgtgggaaat 9
>45731_miR446:micropc
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 10 cattcatatttgatgttaataaatctagatagatatatat-tttagattcattaacatca 68
|||||||||| ||||||||| |||||||| | | |||||| |||||||||||||| |||
Sbjct: 77 cattcatatt-gatgttaatgaatctagacacacatatatgtttagattcattaaaatct 19
Query: 69 atatgaatgtgg 80
||||||||||||
Sbjct: 18 atatgaatgtgg 7
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
|||||||||||||||||||||||||||||| ||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggcaatg 86
>45707_miR809:micropc
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 32 atctagatagatatatattt-tagattcattaacatcaatatgaatgtgggaaatg 86
|||||||||||||||||| | || |||||||| |||||||||||||||| ||||||
Sbjct: 37 atctagatagatatatatgtctatattcattaccatcaatatgaatgtgagaaatg 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 64 catcaatatgaatgtgggaaat 85
||||||||||||||||||||||
Sbjct: 30 catcaatatgaatgtgggaaat 9
>46758_miR808:micropc
Length = 98
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 22 atgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatgtgg 80
|||||||| ||||||||| ||||||||| | ||||||| ||| ||||||||||||| ||
Sbjct: 72 atgttaatgaatctagatggatatatatgtctagattcgttagcatcaatatgaatatga 13
Query: 81 gaaatg 86
||||||
Sbjct: 12 gaaatg 7
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
||||||||||||||| ||||||||| |||||||||
Sbjct: 58 tagattcattaacattaatatgaatatgggaaatg 92
>46468_miR446:micropc
Length = 77
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 56 ttcattaacatcaatatgaatgtgggaaat 85
||||||||||||||||||||||||||||||
Sbjct: 48 ttcattaacatcaatatgaatgtgggaaat 77
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 47 tattttagattcattaacatcaatatgaatgtgggaaat 85
||||| || ||||||||||||||||| ||||||||||||
Sbjct: 39 tatttaagtttcattaacatcaatataaatgtgggaaat 1
>45342_miR809:micropc
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 22 atgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatgtgg 80
|||||||| ||||||||| ||||||||| | ||||||| ||| ||||||||||||| ||
Sbjct: 73 atgttaatgaatctagatggatatatatgtctagattcgttagcatcaatatgaatatga 14
Query: 81 gaaatg 86
||||||
Sbjct: 13 gaaatg 8
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
||||||||||||||| ||||||||| |||||||||
Sbjct: 59 tagattcattaacattaatatgaatatgggaaatg 93
>46670_miR809:micropc
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 21 gatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatgtg 79
|||||||||||||||||| | | |||||| | || |||||||||||| |||||||||||
Sbjct: 25 gatgttaataaatctagacacacatatatgtctacattcattaacatatatatgaatgtg 84
Query: 80 ggaaatg 86
|| ||||
Sbjct: 85 ggtaatg 91
>46060_miR809:micropc
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
||||||||||||||||||||||||| ||| |||||
Sbjct: 42 tagattcattaacatcaatatgaatatggaaaatg 8
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
|||||| |||||||||||||| |||||| ||||||
Sbjct: 46 tagatttattaacatcaatataaatgtgagaaatg 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 19 ttgatgttaataaatctag 37
|||||||||||||||||||
Sbjct: 63 ttgatgttaataaatctag 45
>44980_miR808:micropc
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 21 gatgttaataaatctagatagatatatattt-tagattcattaacatcaatatgaatgtg 79
|||||||||||||||||| | | |||||| | || |||||||||||| |||||||||||
Sbjct: 25 gatgttaataaatctagacacacatatatgtctacattcattaacatatatatgaatgtg 84
Query: 80 ggaaatg 86
|| ||||
Sbjct: 85 ggtaatg 91
>46514_miR441:micropc
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 47 tattttagattcattaacatcaatatgaatgtgggaaa 84
||||| || ||||||||||||||||| |||||||||||
Sbjct: 38 tatttaagtttcattaacatcaatataaatgtgggaaa 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 57 tcattaacatcaatatgaatgtgggaaa 84
||||||||||| ||||||||||||||||
Sbjct: 28 tcattaacatccatatgaatgtgggaaa 1
