miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46401_miR408:micropc
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 61 ccatgcactgcctcttccctggc 83
>45814_miR408:micropc
Length = 85
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 61
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 62 ccatgcactgcctcttccctggc 84
>46505_miR408:micropc
Length = 83
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 60
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 61 ccatgcactgcctcttccctggc 83
>46052_miR408:micropc
Length = 83
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 60
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 61 ccatgcactgcctcttccctggc 83
>45593_miR408:micropc
Length = 85
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 61
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 62 ccatgcactgcctcttccctggc 84
>46359_miR408:micropc
Length = 85
Score = 71.9 bits (36), Expect = 7e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
|||||||||||||||||||||| ||||| |||||| || | |||||||||| || ||
Sbjct: 5 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 64
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggc 84
>46309_miR408:micropc
Length = 83
Score = 71.9 bits (36), Expect = 7e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
|||||||||||||||||||||| ||||| |||||| || | |||||||||| || ||
Sbjct: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83
>46155_miR408:micropc
Length = 83
Score = 71.9 bits (36), Expect = 7e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
|||||||||||||||||||||| ||||| |||||| || | |||||||||| || ||
Sbjct: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83
>46728_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 70/83 (84%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacagaagtaca----tgttttggctctac 60
||||||||| ||||||||||||||| | | ||||||| | | |||| |||||||||
Sbjct: 5 gggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggctctac 64
Query: 61 ccatgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 65 tcatgcactgcctcttccctggc 87
>46159_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 70/83 (84%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacagaagtaca----tgttttggctctac 60
||||||||| ||||||||||||||| | | ||||||| | | |||| |||||||||
Sbjct: 5 gggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggctctac 64
Query: 61 ccatgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 65 tcatgcactgcctcttccctggc 87
>45531_miR408:micropc
Length = 89
Score = 60.0 bits (30), Expect = 3e-10
Identities = 70/83 (84%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacagaagtaca----tgttttggctctac 60
||||||||| ||||||||||||||| | | ||||||| | | |||| |||||||||
Sbjct: 6 gggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggctctac 65
Query: 61 ccatgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 66 tcatgcactgcctcttccctggc 88
>45949_miR408:micropc
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagagcatggatggagcta 32
||||||||||||||||||||||
Sbjct: 10 aggcagagcatggatggagcta 31
>45551_miR408:micropc
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagagcatggatggagcta 32
||||||||||||||||||||||
Sbjct: 10 aggcagagcatggatggagcta 31
>45860_miR408:micropc
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| |||||| || ||||||||||||||||||||||
Sbjct: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
>45398_miR408:micropc
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| |||||| || ||||||||||||||||||||||
Sbjct: 52 tgttgtggctccactcatgcactgcctcttccctggc 88
>45090_miR408:micropc
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| |||||| || ||||||||||||||||||||||
Sbjct: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
>45394_miR408:micropc
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 90 catgcactgcctcttccctggc 111
>44968_miR408:micropc
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 89 catgcactgcctcttccctggc 110
>44861_miR408:micropc
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 99 catgcactgcctcttccctggc 120
>44821_miR408:micropc
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 98 catgcactgcctcttccctggc 119
