miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45104_miR1439:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
Query: 61 tcatctattttggaacggagggagta 86
||||||||||||||||||||||||||
Sbjct: 61 tcatctattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||||||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 86 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 27
Query: 61 tcatctattttggaacggagggagta 86
|||||||||||||| || ||||||||
Sbjct: 26 tcatctattttggagcgaagggagta 1
>46754_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>46594_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>46493_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>46463_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>46315_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>46176_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>45675_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>45656_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>45535_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>44790_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 61 tcatctattttggaacggagggagta 86
||||||||| ||||||||||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || |||| |||||||||| |||||||||||||| ||| |||||| ||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 61 tcatctattttggaacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
>46157_miR1439:micropc
Length = 88
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtac-taaagttaatacaaagttgg 59
|||||||| || |||||||||| |||| |||||||||| | || || |||||||||||
Sbjct: 87 tactccctccgttccaaaataggtgactcaactttgtaaatggaggtagtacaaagttgg 28
Query: 60 ttcatctattttggaacggagggagta 86
|||||||||||| ||| |||||||||
Sbjct: 27 gtcatctattttgaaacagagggagta 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 caaaatagatgacccaactttgtactaaagtta-atacaaagttggttcatctattttgg 73
||||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct: 15 caaaatagatgacccaactttgtactacctccatttacaaagttgagtcacctattttgg 74
Query: 74 aacggagggagta 86
|||||||||||||
Sbjct: 75 aacggagggagta 87
>44862_miR1439:micropc
Length = 88
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtac-taaagttaatacaaagttgg 59
|||||||| || |||||||||| |||| |||||||||| | || || |||||||||||
Sbjct: 87 tactccctccgttccaaaataggtgactcaactttgtaaatggaggtagtacaaagttgg 28
Query: 60 ttcatctattttggaacggagggagta 86
|||||||||||| ||| |||||||||
Sbjct: 27 gtcatctattttgaaacagagggagta 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 caaaatagatgacccaactttgtactaaagtta-atacaaagttggttcatctattttgg 73
||||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct: 15 caaaatagatgacccaactttgtactacctccatttacaaagttgagtcacctattttgg 74
Query: 74 aacggagggagta 86
|||||||||||||
Sbjct: 75 aacggagggagta 87
>45223_miR1137:micropc
Length = 51
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 aactttgtactaaagttaatacaaagttgg 59
|||||||||||||||||| |||||||||||
Sbjct: 18 aactttgtactaaagttagtacaaagttgg 47
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 24 tgacccaactttgtactaaagttaatacaaagtt 57
||||||||||||||||||| ||| |||||||||
Sbjct: 51 tgacccaactttgtactaactttagtacaaagtt 18
>46679_miR1439:micropc
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 tattttggaacggagggagta 86
|||||||||||||||||||||
Sbjct: 77 tattttggaacggagggagta 97
>46347_miR1137:micropc
Length = 55
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 gatgacccaactttgtactaa 42
|||||||||||||||||||||
Sbjct: 55 gatgacccaactttgtactaa 35
>45189_miR1439:micropc
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 tattttggaacggagggagta 86
|||||||||||||||||||||
Sbjct: 56 tattttggaacggagggagta 76
>46433_miR1439:micropc
Length = 153
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 attttggaacggagggagta 86
||||||||||||||||||||
Sbjct: 133 attttggaacggagggagta 152
>46102_miR1137:micropc
Length = 51
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 30 aactttgtactaaagttaatacaaagt 56
||||||||||||| |||| ||||||||
Sbjct: 34 aactttgtactaaggttagtacaaagt 8
>44826_miR1439:micropc
Length = 172
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 ttttggaacggagggagta 86
|||||||||||||||||||
Sbjct: 154 ttttggaacggagggagta 172
