miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46654_miR1030:micropc
Length = 151
Score = 297 bits (150), Expect = 1e-81
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1 ctgcacctgcacctgcacctcaactaagcttattagtttccatatctaacactctatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgcacctgcacctgcacctcaactaagcttattagtttccatatctaacactctatatc 61
Query: 61 taattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 taattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaaa 121
Query: 121 caaacgcaaaagatgcaggtgcaaatgcag 150
||||||||||||||||||||||||||||||
Sbjct: 122 caaacgcaaaagatgcaggtgcaaatgcag 151
>46279_miR530:micropc
Length = 148
Score = 285 bits (144), Expect = 5e-78
Identities = 147/148 (99%)
Strand = Plus / Minus
Query: 2 tgcacctgcacctgcacctcaactaagcttattagtttccatatctaacactctatatct 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tgcacttgcacctgcacctcaactaagcttattagtttccatatctaacactctatatct 89
Query: 62 aattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaaac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 aattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaaac 29
Query: 122 aaacgcaaaagatgcaggtgcaaatgca 149
||||||||||||||||||||||||||||
Sbjct: 28 aaacgcaaaagatgcaggtgcaaatgca 1
>45885_miR530:micropc
Length = 135
Score = 133 bits (67), Expect = 4e-32
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 60 ctaattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaa 119
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 91 ctaattgtaccacatactgtatcgacagaagttgattttgtttgtggagtcaagaacaaa 32
Query: 120 acaaacgcaa-aagatgcaggtgcaaatgca 149
||||| |||| ||||||||||||||||||||
Sbjct: 31 acaaaagcaataagatgcaggtgcaaatgca 1
>45983_miR530:micropc
Length = 138
Score = 87.7 bits (44), Expect = 2e-18
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 2 tgcacctgcacctgcacctcaactaagcttattagtttccatatctaa 49
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tgcacttgcacctgcacctcaactaagcttattagtttccatatctaa 91
>45671_miR530:micropc
Length = 138
Score = 87.7 bits (44), Expect = 2e-18
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 2 tgcacctgcacctgcacctcaactaagcttattagtttccatatctaa 49
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tgcacttgcacctgcacctcaactaagcttattagtttccatatctaa 91
>44837_miR1030:micropc
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctgcacctgcacctgcacctcaa 23
|||||||||||||||||||||||
Sbjct: 2 ctgcacctgcacctgcacctcaa 24
>46152_miR530:micropc
Length = 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 130 aagatgcaggtgcaaatgca 149
||||||||||||||||||||
Sbjct: 20 aagatgcaggtgcaaatgca 1
>45910_miR530:micropc
Length = 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 130 aagatgcaggtgcaaatgca 149
||||||||||||||||||||
Sbjct: 20 aagatgcaggtgcaaatgca 1
