miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45398_miR408:micropc
          Length = 89

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 61

                                     
Query: 61 ccactcatgcactgcctcttccctggc 87
          |||||||||||||||||||||||||||
Sbjct: 62 ccactcatgcactgcctcttccctggc 88




>45090_miR408:micropc
          Length = 87

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60

                                     
Query: 61 ccactcatgcactgcctcttccctggc 87
          |||||||||||||||||||||||||||
Sbjct: 61 ccactcatgcactgcctcttccctggc 87




>46728_miR408:micropc
          Length = 87

 Score =  117 bits (59), Expect = 1e-27
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
          ||||||||  ||||||||||||||||||||||||||||||| | |  |||||||||||||
Sbjct: 1  gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 60

                                     
Query: 61 ccactcatgcactgcctcttccctggc 87
          | |||||||||||||||||||||||||
Sbjct: 61 ctactcatgcactgcctcttccctggc 87




>46159_miR408:micropc
          Length = 87

 Score =  117 bits (59), Expect = 1e-27
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
          ||||||||  ||||||||||||||||||||||||||||||| | |  |||||||||||||
Sbjct: 1  gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 60

                                     
Query: 61 ccactcatgcactgcctcttccctggc 87
          | |||||||||||||||||||||||||
Sbjct: 61 ctactcatgcactgcctcttccctggc 87




>45531_miR408:micropc
          Length = 89

 Score =  117 bits (59), Expect = 1e-27
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacagggacgaggtagagcatggatggagttcccaacagaacagtcaagctgttgtggct 60
          ||||||||  ||||||||||||||||||||||||||||||| | |  |||||||||||||
Sbjct: 2  gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 61

                                     
Query: 61 ccactcatgcactgcctcttccctggc 87
          | |||||||||||||||||||||||||
Sbjct: 62 ctactcatgcactgcctcttccctggc 88




>45949_miR408:micropc
          Length = 99

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          ||||||||||| |||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99




>45551_miR408:micropc
          Length = 99

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          ||||||||||| |||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99




>46359_miR408:micropc
          Length = 85

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
          ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 47 ctgttttggcttcactcatgcactgcctcttccctggc 84




>46309_miR408:micropc
          Length = 83

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
          ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83




>46155_miR408:micropc
          Length = 83

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
          ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83




>45394_miR408:micropc
          Length = 112

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||| | ||||||||||||||||||||||||
Sbjct: 74  ctgttgtggctacgctcatgcactgcctcttccctggc 111




>44968_miR408:micropc
          Length = 110

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||| | ||||||||||||||||||||||||
Sbjct: 73  ctgttgtggctacgctcatgcactgcctcttccctggc 110




>44861_miR408:micropc
          Length = 121

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||| | ||||||||||||||||||||||||
Sbjct: 83  ctgttgtggctacgctcatgcactgcctcttccctggc 120




>44821_miR408:micropc
          Length = 119

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctccactcatgcactgcctcttccctggc 87
           ||||||||||| | ||||||||||||||||||||||||
Sbjct: 82  ctgttgtggctacgctcatgcactgcctcttccctggc 119




>46505_miR408:micropc
          Length = 83

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83




>46401_miR408:micropc
          Length = 83

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83




>46052_miR408:micropc
          Length = 83

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83




>45814_miR408:micropc
          Length = 85

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 48 tgttttggctctacccatgcactgcctcttccctggc 84




>45726_miR408:micropc
          Length = 83

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83




>45593_miR408:micropc
          Length = 85

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 48 tgttttggctctacccatgcactgcctcttccctggc 84