miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46804_miR396:micropc
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
Query: 61 atctttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||||||
Sbjct: 61 atctttgcggttcaataaagctgtggga 88
>46469_miR396:micropc
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
Query: 61 atctttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||||||
Sbjct: 61 atctttgcggttcaataaagctgtggga 88
>46290_miR396:micropc
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |
Sbjct: 1 ttccacggctttcttgaactgcatgggttttgatctatcagatctgtgtttat-cataca 59
Query: 61 atctttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||||
Sbjct: 60 gtctttgcggttcaataaagctgtggga 87
>45423_miR396:micropc
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |
Sbjct: 1 ttccacggctttcttgaactgcatgggttttgatctatcagatctgtgtttat-cataca 59
Query: 61 atctttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||||
Sbjct: 60 gtctttgcggttcaataaagctgtggga 87
>45341_miR396:micropc
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgggctttgatctatcagatctttgtttttatatata 60
||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |
Sbjct: 1 ttccacggctttcttgaactgcatgggttttgatctatcagatctgtgtttat-cataca 59
Query: 61 atctttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||||
Sbjct: 60 gtctttgcggttcaataaagctgtggga 87
>46723_miR396:micropc
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 tttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||
Sbjct: 77 tttgcggttcaataaagctgtggga 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46137_miR396:micropc
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 aatctttgcggttcaataaagctgtggga 88
||||||||| |||||||||||||||||||
Sbjct: 46 aatctttgctgttcaataaagctgtggga 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgg 26
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
>45774_miR396:micropc
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 tttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||
Sbjct: 77 tttgcggttcaataaagctgtggga 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>45477_miR396:micropc
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 tttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||
Sbjct: 77 tttgcggttcaataaagctgtggga 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>45426_miR396:micropc
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 aatctttgcggttcaataaagctgtggga 88
||||||||| |||||||||||||||||||
Sbjct: 46 aatctttgctgttcaataaagctgtggga 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgg 26
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
>45339_miR396:micropc
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 tttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||
Sbjct: 76 tttgcggttcaataaagctgtggga 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>45136_miR396:micropc
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 aatctttgcggttcaataaagctgtggga 88
||||||||| |||||||||||||||||||
Sbjct: 46 aatctttgctgttcaataaagctgtggga 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgg 26
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
>45040_miR396:micropc
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 tttgcggttcaataaagctgtggga 88
|||||||||||||||||||||||||
Sbjct: 76 tttgcggttcaataaagctgtggga 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46571_miR396:micropc
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>45646_miR396:micropc
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>45555_miR396:micropc
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>45336_miR396:micropc
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>45046_miR396:micropc
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>44996_miR396:micropc
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>44986_miR396:micropc
Length = 182
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 159 ttgcggttcaataaagctgtggga 182
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>44921_miR396:micropc
Length = 182
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
||||||||||||||||||||||||
Sbjct: 159 ttgcggttcaataaagctgtggga 182
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46729_miR396:micropc
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tgcggttcaataaagctgtggga 88
|||||||||||||||||||||||
Sbjct: 92 tgcggttcaataaagctgtggga 114
>46014_miR396:micropc
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tgcggttcaataaagctgtggga 88
|||||||||||||||||||||||
Sbjct: 92 tgcggttcaataaagctgtggga 114
>45408_miR396:micropc
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tgcggttcaataaagctgtggga 88
|||||||||||||||||||||||
Sbjct: 92 tgcggttcaataaagctgtggga 114
>46751_miR396:micropc
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcggttcaataaagctgtggga 88
||||||||||||||||||||||
Sbjct: 87 gcggttcaataaagctgtggga 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46345_miR396:micropc
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcggttcaataaagctgtggga 88
||||||||||||||||||||||
Sbjct: 87 gcggttcaataaagctgtggga 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46285_miR396:micropc
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcggttcaataaagctgtggga 88
||||||||||||||||||||||
Sbjct: 87 gcggttcaataaagctgtggga 108
>45938_miR396:micropc
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgg 26
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 60 aatctttgcggttcaataaagctgtggga 88
||||||||| |||||| ||||||||||||
Sbjct: 69 aatctttgcagttcaacaaagctgtggga 97
>45845_miR396:micropc
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcggttcaataaagctgtggga 88
||||||||||||||||||||||
Sbjct: 87 gcggttcaataaagctgtggga 108
>45790_miR396:micropc
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgg 26
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 60 aatctttgcggttcaataaagctgtggga 88
||||||||| |||||| ||||||||||||
Sbjct: 69 aatctttgcagttcaacaaagctgtggga 97
>45064_miR396:micropc
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcggttcaataaagctgtggga 88
||||||||||||||||||||||
Sbjct: 87 gcggttcaataaagctgtggga 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>44995_miR396:micropc
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcatgg 26
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 60 aatctttgcggttcaataaagctgtggga 88
||||||||| |||||| ||||||||||||
Sbjct: 69 aatctttgcagttcaacaaagctgtggga 97
>46815_miR396:micropc
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46787_miR396:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46651_miR396:micropc
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacggctttcttgaact 20
>46556_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
|||||| |||||||||||||||||
Sbjct: 90 ttgcgggtcaataaagctgtggga 113
>46492_miR396:micropc
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacggctttcttgaact 20
>46059_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
|||||| |||||||||||||||||
Sbjct: 90 ttgcgggtcaataaagctgtggga 113
>45980_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
|||||| |||||||||||||||||
Sbjct: 90 ttgcgggtcaataaagctgtggga 113
>45667_miR396:micropc
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>45626_miR396:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>45530_miR396:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>45463_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
|||||| |||||||||||||||||
Sbjct: 90 ttgcgggtcaataaagctgtggga 113
>45335_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
|||||| |||||||||||||||||
Sbjct: 90 ttgcgggtcaataaagctgtggga 113
>45080_miR396:micropc
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacggctttcttgaact 20
>44875_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 65 ttgcggttcaataaagctgtggga 88
|||||| |||||||||||||||||
Sbjct: 90 ttgcgggtcaataaagctgtggga 113
>44831_miR396:micropc
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaactgcat 24
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>44824_miR396:micropc
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacggctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacggctttcttgaact 20
