miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45856_miR399:micropc
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 cagggtatatctcctttggcacggaggcacgcaaccatccgtaggtatgttaatggatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagggtatatctcctttggcacggaggcacgcaaccatccgtaggtatgttaatggatgg 60
Query: 61 tggcaagctgctggcttggaagatgcagcataatagccgtgcgtgccaaaggagaattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggcaagctgctggcttggaagatgcagcataatagccgtgcgtgccaaaggagaattgc 120
Query: 121 cctg 124
||||
Sbjct: 121 cctg 124
>46617_miR399:micropc
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 2 agggtatatctcctttggcacggaggcacgcaaccatccgtaggtatgttaatggatggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtatatctcctttggcacggaggcacgcaaccatccgtaggtatgttaatggatggt 60
Query: 62 ggcaagctgctggcttggaagatgcagcataatagccgtgcgtgccaaaggagaattgcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcaagctgctggcttggaagatgcagcataatagccgtgcgtgccaaaggagaattgcc 120
Query: 122 ct 123
||
Sbjct: 121 ct 122
>46699_miR399:micropc
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 3 gggtatatctcctttggcacggaggcacgcaaccatccgtaggtatgttaatggatggtg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtatatctcctttggcacggaggcacgcaaccatccgtaggtatgttaatggatggtg 60
Query: 63 gcaagctgctggcttggaagatgcagcataatagccgtgcgtgccaaaggagaattgccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaagctgctggcttggaagatgcagcataatagccgtgcgtgccaaaggagaattgccc 120
>45532_miR399:micropc
Length = 114
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 95 agccgtgcgtgccaaaggagaattgccctg 124
||||||||||||||||||||||||||||||
Sbjct: 85 agccgtgcgtgccaaaggagaattgccctg 114
>45183_miR399:micropc
Length = 114
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 95 agccgtgcgtgccaaaggagaattgccctg 124
||||||||||||||||||||||||||||||
Sbjct: 85 agccgtgcgtgccaaaggagaattgccctg 114
>46409_miR399:micropc
Length = 112
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 agccgtgcgtgccaaaggagaattgccct 123
|||||||||||||||||||||||||||||
Sbjct: 84 agccgtgcgtgccaaaggagaattgccct 112
>45456_miR399:micropc
Length = 110
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 agccgtgcgtgccaaaggagaattgccc 122
||||||||||||||||||||||||||||
Sbjct: 83 agccgtgcgtgccaaaggagaattgccc 110
>46746_miR399:micropc
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tgccaaaggagaattgccctg 124
|||||||||||||||||||||
Sbjct: 66 tgccaaaggagaattgccctg 86
>46471_miR399:micropc
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tgccaaaggagaattgccctg 124
|||||||||||||||||||||
Sbjct: 70 tgccaaaggagaattgccctg 90
>45711_miR399:micropc
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tgccaaaggagaattgccctg 124
|||||||||||||||||||||
Sbjct: 70 tgccaaaggagaattgccctg 90
>45072_miR399:micropc
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tgccaaaggagaattgccctg 124
|||||||||||||||||||||
Sbjct: 66 tgccaaaggagaattgccctg 86
>45403_miR399:micropc
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 tgccaaaggagaattgccct 123
||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccct 84
>45028_miR399:micropc
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 tgccaaaggagaattgccct 123
||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccct 84
