miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46803_miR156:micropc
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 62
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctttctg 86
>46709_miR156:micropc
Length = 90
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 63
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 64 tgcgtgtgctcacttctctttctg 87
>46842_miR156:micropc
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 60
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 61 tgcgtgtgctcacttctctttctg 84
>46069_miR156:micropc
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 62
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctttctg 86
>45385_miR156:micropc
Length = 90
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 63
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 64 tgcgtgtgctcacttctctttctg 87
>45182_miR156:micropc
Length = 90
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 63
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 64 tgcgtgtgctcacttctctttctg 87
>45582_miR156:micropc
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||||||||||||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctt 83
>45528_miR156:micropc
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||||||||||||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctt 83
>45113_miR156:micropc
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||||||||||||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctt 83
>45062_miR156:micropc
Length = 91
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||||||||||||||
Sbjct: 53 ttgttggaattatgcgtgtgctcacttctctt 84
>45047_miR156:micropc
Length = 91
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||||||||||||||
Sbjct: 53 ttgttggaattatgcgtgtgctcacttctctt 84
>44842_miR156:micropc
Length = 91
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||||||||||||||
Sbjct: 53 ttgttggaattatgcgtgtgctcacttctctt 84
>44793_miR156:micropc
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
|||||||||||||| || ||| ||||| ||||| | || |||||||||||| || |||
Sbjct: 4 cagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgagtta 62
Query: 61 tgcgtgtgctcacttctctt 80
||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82
>45810_miR156:micropc
Length = 91
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||| ||||||||||
Sbjct: 53 ttgttggaattatgcgtgtgcccacttctctt 84
>45659_miR156:micropc
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 49 ttgttggaattatgcgtgtgctcacttctctt 80
||||||||||||||||||||| ||||||||||
Sbjct: 52 ttgttggaattatgcgtgtgcccacttctctt 83
>46707_miR156:micropc
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 65 tgcgtgtgctcacttctctttctg 88
>46153_miR156:micropc
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 66 tgcgtgtgctcacttctctttctg 89
>46066_miR156:micropc
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctttctg 86
>45524_miR156:micropc
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
||||||||||||||||||||||||
Sbjct: 66 tgcgtgtgctcacttctctttctg 89
>46798_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tatgcgtgtgctcacttctctt 80
||||||||||||||||||||||
Sbjct: 58 tatgcgtgtgctcacttctctt 79
>45125_miR156:micropc
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tatgcgtgtgctcacttctctt 80
||||||||||||||||||||||
Sbjct: 57 tatgcgtgtgctcacttctctt 78
>46175_miR156:micropc
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 atgcgtgtgctcacttctctt 80
|||||||||||||||||||||
Sbjct: 65 atgcgtgtgctcacttctctt 85
>45587_miR156:micropc
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 atgcgtgtgctcacttctctt 80
|||||||||||||||||||||
Sbjct: 64 atgcgtgtgctcacttctctt 84
>46749_miR156:micropc
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
|||||||||||||||||| |||||
Sbjct: 59 tgcgtgtgctcacttctcattctg 82
>46538_miR156:micropc
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
|||||||||||||||||| |||||
Sbjct: 60 tgcgtgtgctcacttctcattctg 83
>46134_miR156:micropc
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
|||||||||||||||||| |||||
Sbjct: 60 tgcgtgtgctcacttctcattctg 83
>45549_miR156:micropc
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgcgtgtgctcacttctctttctg 84
|||||||||||||||||| |||||
Sbjct: 57 tgcgtgtgctcacttctcattctg 80
>46824_miR156:micropc
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctg 81
>46408_miR156:micropc
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctg 78
>45823_miR156:micropc
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctg 81
>45776_miR156:micropc
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctg 81
>45314_miR156:micropc
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctg 78
>45286_miR156:micropc
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctg 81
>45274_miR156:micropc
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctg 78
>45251_miR156:micropc
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66 gtgctcacttctctttctg 84
|||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctg 78
