miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46359_miR408:micropc
Length = 85
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcac 61
Query: 61 tcatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 62 tcatgcactgcctcttccctggc 84
>46309_miR408:micropc
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcac 60
Query: 61 tcatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 61 tcatgcactgcctcttccctggc 83
>46505_miR408:micropc
Length = 83
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 5 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 63
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83
>46052_miR408:micropc
Length = 83
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 5 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 63
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83
>45593_miR408:micropc
Length = 85
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 6 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 64
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggc 84
>46401_miR408:micropc
Length = 83
Score = 71.9 bits (36), Expect = 7e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||| || | |||||||||| || ||
Sbjct: 5 gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83
>45814_miR408:micropc
Length = 85
Score = 71.9 bits (36), Expect = 7e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||| || | |||||||||| || ||
Sbjct: 6 gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 64
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggc 84
>45726_miR408:micropc
Length = 83
Score = 71.9 bits (36), Expect = 7e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||| || | |||||||||| || ||
Sbjct: 5 gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83
>45860_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
>45398_miR408:micropc
Length = 89
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 51 ctgttgtggctccactcatgcactgcctcttccctggc 88
>45090_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
>45394_miR408:micropc
Length = 112
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 73 tctgttgtggctacgctcatgcactgcctcttccctggc 111
>44968_miR408:micropc
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 72 tctgttgtggctacgctcatgcactgcctcttccctggc 110
>44861_miR408:micropc
Length = 121
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 82 tctgttgtggctacgctcatgcactgcctcttccctggc 120
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1 gctgggaacaggcagagcatggatgcagctattaacagaaa 41
||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 2 gctgggaacaggcagggcacgaatggagctatcaacagaaa 42
>44821_miR408:micropc
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 81 tctgttgtggctacgctcatgcactgcctcttccctggc 119
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1 gctgggaacaggcagagcatggatgcagctattaacagaaa 41
||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 1 gctgggaacaggcagggcacgaatggagctatcaacagaaa 41
>46728_miR408:micropc
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| |||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
>46159_miR408:micropc
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| |||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
>45531_miR408:micropc
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| |||||||||||||||||||||||||
Sbjct: 51 ctgttgtggctctactcatgcactgcctcttccctggc 88
>45949_miR408:micropc
Length = 99
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 actcatgcactgcctcttccctggc 83
|||||||||||||||||||||||||
Sbjct: 75 actcatgcactgcctcttccctggc 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatgcagctattaaca 37
|||||||||||||||| |||||| ||||
Sbjct: 10 aggcagagcatggatggagctatcaaca 37
>45551_miR408:micropc
Length = 99
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 actcatgcactgcctcttccctggc 83
|||||||||||||||||||||||||
Sbjct: 75 actcatgcactgcctcttccctggc 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatgcagctattaaca 37
|||||||||||||||| |||||| ||||
Sbjct: 10 aggcagagcatggatggagctatcaaca 37
