miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46116_miR398:micropc
          Length = 77

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggagcgacctggaatacatgtgggctccaccctcctgggttctcttgggcaacatgtgt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  aggagcgacctggaatacatgtgggctccaccctcctgggttctcttgggcaacatgtgt 61

                         
Query: 61 tctcaggtcgcccct 75
          |||||||||||||||
Sbjct: 62 tctcaggtcgcccct 76




>46111_miR398:micropc
          Length = 76

 Score =  111 bits (56), Expect = 7e-26
 Identities = 72/76 (94%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggagcgacctggaat-acatgtgggctccaccctcctgggttctcttgggcaacatgtg 59
          |||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1  aggagcgacctgaaatcacatgtgggctgcaccctcctgggttatcttgggcaacatgtg 60

                          
Query: 60 ttctcaggtcgcccct 75
          ||||||||||||||||
Sbjct: 61 ttctcaggtcgcccct 76




>45422_miR398:micropc
          Length = 78

 Score =  111 bits (56), Expect = 7e-26
 Identities = 72/76 (94%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  aggagcgacctggaat-acatgtgggctccaccctcctgggttctcttgggcaacatgtg 59
          |||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 2  aggagcgacctgaaatcacatgtgggctgcaccctcctgggttatcttgggcaacatgtg 61

                          
Query: 60 ttctcaggtcgcccct 75
          ||||||||||||||||
Sbjct: 62 ttctcaggtcgcccct 77




>46304_miR398:micropc
          Length = 59

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 49 ggcaacatgtgttctcaggtcgcccct 75
          |||||||||||||||||||||||||||
Sbjct: 33 ggcaacatgtgttctcaggtcgcccct 59




>45519_miR398:micropc
          Length = 61

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 49 ggcaacatgtgttctcaggtcgcccct 75
          |||||||||||||||||||||||||||
Sbjct: 34 ggcaacatgtgttctcaggtcgcccct 60




>46550_miR398:micropc
          Length = 61

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 49 ggcaacatgtgttctcaggtcgcccct 75
          |||||||| ||||||||||||||||||
Sbjct: 34 ggcaacatttgttctcaggtcgcccct 60




>46690_miR398:micropc
          Length = 75

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catgtgttctcaggtcgcccct 75
          ||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccct 75




>46686_miR398:micropc
          Length = 96

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catgtgttctcaggtcgcccct 75
          ||||||||||||||||||||||
Sbjct: 75 catgtgttctcaggtcgcccct 96




>46371_miR398:micropc
          Length = 77

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catgtgttctcaggtcgcccct 75
          ||||||||||||||||||||||
Sbjct: 55 catgtgttctcaggtcgcccct 76




>46074_miR398:micropc
          Length = 75

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catgtgttctcaggtcgcccct 75
          ||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccct 75




>46034_miR398:micropc
          Length = 77

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catgtgttctcaggtcgcccct 75
          ||||||||||||||||||||||
Sbjct: 55 catgtgttctcaggtcgcccct 76




>45294_miR398:micropc
          Length = 98

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 catgtgttctcaggtcgcccct 75
          ||||||||||||||||||||||
Sbjct: 76 catgtgttctcaggtcgcccct 97




>46725_miR398:micropc
          Length = 67

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 atgtgttctcaggtcgcccct 75
          |||||||||||||||||||||
Sbjct: 46 atgtgttctcaggtcgcccct 66




>46604_miR398:micropc
          Length = 67

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 atgtgttctcaggtcgcccct 75
          |||||||||||||||||||||
Sbjct: 46 atgtgttctcaggtcgcccct 66




>46114_miR398:micropc
          Length = 65

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 atgtgttctcaggtcgcccct 75
          |||||||||||||||||||||
Sbjct: 45 atgtgttctcaggtcgcccct 65




>45920_miR398:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  catgtgttctcaggtcgcccc 74
           |||||||||||||||||||||
Sbjct: 84  catgtgttctcaggtcgcccc 104




>45284_miR398:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  catgtgttctcaggtcgcccc 74
           |||||||||||||||||||||
Sbjct: 84  catgtgttctcaggtcgcccc 104




>45192_miR398:micropc
          Length = 65

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 atgtgttctcaggtcgcccct 75
          |||||||||||||||||||||
Sbjct: 45 atgtgttctcaggtcgcccct 65




>45095_miR398:micropc
          Length = 87

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 atgtgttctcaggtcgcccct 75
          |||||||||||||||||||||
Sbjct: 67 atgtgttctcaggtcgcccct 87




>44891_miR398:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 atgtgttctcaggtcgcccct 75
          |||||||||||||||||||||
Sbjct: 68 atgtgttctcaggtcgcccct 88




>46795_miR398:micropc
          Length = 101

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  tgtgttctcaggtcgcccct 75
           ||||||||||||||||||||
Sbjct: 81  tgtgttctcaggtcgcccct 100




>46392_miR398:micropc
          Length = 68

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 56 tgtgttctcaggtcgcccct 75
          ||||||||||||||||||||
Sbjct: 48 tgtgttctcaggtcgcccct 67




>45898_miR398:micropc
          Length = 66

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 56 tgtgttctcaggtcgcccct 75
          ||||||||||||||||||||
Sbjct: 47 tgtgttctcaggtcgcccct 66




>45694_miR398:micropc
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 56 tgtgttctcaggtcgcccct 75
          ||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcgcccct 99




>46367_miR398:micropc
          Length = 73

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 57 gtgttctcaggtcgcccct 75
          |||||||||||||||||||
Sbjct: 54 gtgttctcaggtcgcccct 72




>45930_miR398:micropc
          Length = 63

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 57 gtgttctcaggtcgcccct 75
          |||||||||||||||||||
Sbjct: 44 gtgttctcaggtcgcccct 62




>45384_miR398:micropc
          Length = 83

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 57 gtgttctcaggtcgcccct 75
          |||||||||||||||||||
Sbjct: 65 gtgttctcaggtcgcccct 83




>45163_miR398:micropc
          Length = 71

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 57 gtgttctcaggtcgcccct 75
          |||||||||||||||||||
Sbjct: 53 gtgttctcaggtcgcccct 71




>45087_miR398:micropc
          Length = 84

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 57 gtgttctcaggtcgcccct 75
          |||||||||||||||||||
Sbjct: 65 gtgttctcaggtcgcccct 83




>44941_miR398:micropc
          Length = 61

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 57 gtgttctcaggtcgcccct 75
          |||||||||||||||||||
Sbjct: 43 gtgttctcaggtcgcccct 61