miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45682_miR390:micropc
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
Query: 61 atcctgagttt 71
|||||||||||
Sbjct: 61 atcctgagttt 71
>45123_miR390:micropc
Length = 72
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
Query: 61 atcctgagttt 71
|||||||||||
Sbjct: 61 atcctgagttt 71
>45151_miR390:micropc
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcca 60
Query: 62 tcctgagtt 70
|||||||||
Sbjct: 61 tcctgagtt 69
>46582_miR390:micropc
Length = 72
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatggcgggtcttgaatcttgatcttcatttgcgctatcc 60
Query: 61 atcctgagttt 71
||||||||||
Sbjct: 61 ctcctgagttt 71
>46562_miR390:micropc
Length = 96
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgg 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 77 gcgctatccatcctgagttt 96
>46099_miR390:micropc
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgg 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 78 gcgctatccatcctgagttt 97
>45789_miR390:micropc
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgg 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 78 gcgctatccatcctgagttt 97
>45779_miR390:micropc
Length = 96
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgg 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 77 gcgctatccatcctgagttt 96
>45362_miR390:micropc
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgg 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 77 gcgctatccatcctgagttt 96
>44966_miR390:micropc
Length = 98
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgg 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 78 gcgctatccatcctgagttt 97
>46796_miR390:micropc
Length = 95
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgccatgg 25
||||||||||||||||||||||||
Sbjct: 1 agctcaggagggatagcgccatgg 24
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtt 70
|||||||||||||||||||
Sbjct: 77 gcgctatccatcctgagtt 95
>45647_miR390:micropc
Length = 94
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgccatgg 25
||||||||||||||||||||||||
Sbjct: 1 agctcaggagggatagcgccatgg 24
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtt 70
|||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagtt 94
>45612_miR390:micropc
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ttgcgctatccatcctgagttt 71
||||||||||||||||||||||
Sbjct: 66 ttgcgctatccatcctgagttt 87
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||| ||||||
Sbjct: 1 aagctcaggagggatagcaccatgg 25
>44796_miR390:micropc
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ttgcgctatccatcctgagttt 71
||||||||||||||||||||||
Sbjct: 66 ttgcgctatccatcctgagttt 87
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||| ||||||
Sbjct: 1 aagctcaggagggatagcaccatgg 25
>45827_miR390:micropc
Length = 55
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>45719_miR390:micropc
Length = 55
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>45763_miR390:micropc
Length = 54
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 1 agctcaggagggatagcgcc 20
>45599_miR390:micropc
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
|||||||||||||||||| |||||
Sbjct: 1 aagctcaggagggatagcaccatg 24
>45502_miR390:micropc
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
|||||||||||||||||| |||||
Sbjct: 1 aagctcaggagggatagcaccatg 24
>45082_miR390:micropc
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
|||||||||||||||||| |||||
Sbjct: 1 aagctcaggagggatagcaccatg 24
