miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46128_miR398:micropc
          Length = 140

 Score =  276 bits (139), Expect = 4e-75
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60

                                                                       
Query: 61  gtcagtacaaatttttgatgcacatacagttgtttgtgagacattgtcgaccatccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtcagtacaaatttttgatgcacatacagttgtttgtgagacattgtcgaccatccattt 120

                              
Query: 121 gtgttctcaggtcacccct 139
           |||||||||||||||||||
Sbjct: 121 gtgttctcaggtcacccct 139




>45118_miR398:micropc
          Length = 139

 Score =  276 bits (139), Expect = 4e-75
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60

                                                                       
Query: 61  gtcagtacaaatttttgatgcacatacagttgtttgtgagacattgtcgaccatccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtcagtacaaatttttgatgcacatacagttgtttgtgagacattgtcgaccatccattt 120

                              
Query: 121 gtgttctcaggtcacccct 139
           |||||||||||||||||||
Sbjct: 121 gtgttctcaggtcacccct 139




>45917_miR398:micropc
          Length = 140

 Score =  222 bits (112), Expect = 5e-59
 Identities = 134/140 (95%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
           ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct: 1   aggagtgacactaagaacacacatggttgaattgctatctccactgcatattcatatgtt 60

                                                                       
Query: 61  gt-cagtacaaatttttgatgcacatacagttgtttgtgagacattgtcgaccatccatt 119
           || ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61  gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtctaccatccatt 120

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 121 tgtgttctcaggtcacccct 140




>45213_miR398:micropc
          Length = 141

 Score =  222 bits (112), Expect = 5e-59
 Identities = 134/140 (95%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
           ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct: 1   aggagtgacactaagaacacacatggttgaattgctatctccactgcatattcatatgtt 60

                                                                       
Query: 61  gt-cagtacaaatttttgatgcacatacagttgtttgtgagacattgtcgaccatccatt 119
           || ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61  gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtctaccatccatt 120

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 121 tgtgttctcaggtcacccct 140




>45602_miR398:micropc
          Length = 142

 Score =  204 bits (103), Expect = 1e-53
 Identities = 134/142 (94%), Gaps = 3/142 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1   aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60

                                                                       
Query: 61  gt-cagtacaaatttttgatgcacatacagttgtttgtgagacat--tgtcgaccatcca 117
           || ||||||||||||| ||||||||||||||||||||||||||||  |||  ||||||||
Sbjct: 61  gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 121 tttgtgttctcaggtcacccct 142




>45412_miR398:micropc
          Length = 143

 Score =  204 bits (103), Expect = 1e-53
 Identities = 134/142 (94%), Gaps = 3/142 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1   aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60

                                                                       
Query: 61  gt-cagtacaaatttttgatgcacatacagttgtttgtgagacat--tgtcgaccatcca 117
           || ||||||||||||| ||||||||||||||||||||||||||||  |||  ||||||||
Sbjct: 61  gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 121 tttgtgttctcaggtcacccct 142




>46703_miR398:micropc
          Length = 149

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 1  aggagtgacactaagaacacatatggttgaattgct 36
          ||||||||||||||||||||||||||| ||||||||
Sbjct: 1  aggagtgacactaagaacacatatggtggaattgct 36



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149




>46028_miR398:micropc
          Length = 150

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 1  aggagtgacactaagaacacatatggttgaattgct 36
          ||||||||||||||||||||||||||| ||||||||
Sbjct: 1  aggagtgacactaagaacacatatggtggaattgct 36



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149




>46478_miR398:micropc
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 116 catttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||||
Sbjct: 82  catttgtgttctcaggtcacccct 105




>46384_miR398:micropc
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 116 catttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||||
Sbjct: 83  catttgtgttctcaggtcacccct 106




>46310_miR398:micropc
          Length = 113

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 91  tttgtgttctcaggtcacccct 112




>46301_miR398:micropc
          Length = 111

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 90  tttgtgttctcaggtcacccct 111




>45772_miR398:micropc
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 70  tttgtgttctcaggtcacccct 91




>45427_miR398:micropc
          Length = 94

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 73  tttgtgttctcaggtcacccct 94




>45083_miR398:micropc
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 70  tttgtgttctcaggtcacccct 91




>44964_miR398:micropc
          Length = 94

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 tttgtgttctcaggtcacccct 139
           ||||||||||||||||||||||
Sbjct: 73  tttgtgttctcaggtcacccct 94




>46761_miR398:micropc
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 ttgtgttctcaggtcacccct 139
           |||||||||||||||||||||
Sbjct: 112 ttgtgttctcaggtcacccct 132




>46499_miR398:micropc
          Length = 67

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 ttgtgttctcaggtcacccct 139
           |||||||||||||||||||||
Sbjct: 46  ttgtgttctcaggtcacccct 66




>46491_miR398:micropc
          Length = 131

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 ttgtgttctcaggtcacccct 139
           |||||||||||||||||||||
Sbjct: 111 ttgtgttctcaggtcacccct 131




>46328_miR398:micropc
          Length = 138

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 ttgtgttctcaggtcacccct 139
           |||||||||||||||||||||
Sbjct: 118 ttgtgttctcaggtcacccct 138




>45871_miR398:micropc
          Length = 140

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 ttgtgttctcaggtcacccct 139
           |||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139




>45288_miR398:micropc
          Length = 65

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 ttgtgttctcaggtcacccct 139
           |||||||||||||||||||||
Sbjct: 45  ttgtgttctcaggtcacccct 65




>46124_miR398:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 77  tgtgttctcaggtcacccct 96




>45706_miR398:micropc
          Length = 106

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 87  tgtgttctcaggtcacccct 106




>45380_miR398:micropc
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 88  tgtgttctcaggtcacccct 107




>45370_miR398:micropc
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tgtgttctcaggtcacccct 139
           ||||||||||||||||||||
Sbjct: 76  tgtgttctcaggtcacccct 95