miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45814_miR408:micropc
          Length = 85

 Score =  165 bits (83), Expect = 6e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 61

                                 
Query: 61 ccatgcactgcctcttccctggc 83
          |||||||||||||||||||||||
Sbjct: 62 ccatgcactgcctcttccctggc 84




>45726_miR408:micropc
          Length = 83

 Score =  165 bits (83), Expect = 6e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60

                                 
Query: 61 ccatgcactgcctcttccctggc 83
          |||||||||||||||||||||||
Sbjct: 61 ccatgcactgcctcttccctggc 83




>46505_miR408:micropc
          Length = 83

 Score =  157 bits (79), Expect = 1e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 60

                                 
Query: 61 ccatgcactgcctcttccctggc 83
          |||||||||||||||||||||||
Sbjct: 61 ccatgcactgcctcttccctggc 83




>46052_miR408:micropc
          Length = 83

 Score =  157 bits (79), Expect = 1e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 60

                                 
Query: 61 ccatgcactgcctcttccctggc 83
          |||||||||||||||||||||||
Sbjct: 61 ccatgcactgcctcttccctggc 83




>45593_miR408:micropc
          Length = 85

 Score =  157 bits (79), Expect = 1e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2  gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 61

                                 
Query: 61 ccatgcactgcctcttccctggc 83
          |||||||||||||||||||||||
Sbjct: 62 ccatgcactgcctcttccctggc 84




>46359_miR408:micropc
          Length = 85

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 70/80 (87%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
          |||||||||||||||||||||| ||||| |||||| || |   ||||||||||  || ||
Sbjct: 5  gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 64

                              
Query: 64 tgcactgcctcttccctggc 83
          ||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggc 84




>46309_miR408:micropc
          Length = 83

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 70/80 (87%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
          |||||||||||||||||||||| ||||| |||||| || |   ||||||||||  || ||
Sbjct: 4  gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63

                              
Query: 64 tgcactgcctcttccctggc 83
          ||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83




>46155_miR408:micropc
          Length = 83

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 70/80 (87%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaacaggcagagcatggatggagctactaacag-aagtacatgttttggctctaccca 63
          |||||||||||||||||||||| ||||| |||||| || |   ||||||||||  || ||
Sbjct: 4  gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63

                              
Query: 64 tgcactgcctcttccctggc 83
          ||||||||||||||||||||
Sbjct: 64 tgcactgcctcttccctggc 83




>46728_miR408:micropc
          Length = 87

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 70/83 (84%), Gaps = 4/83 (4%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaacaggcagagcatggatggagctactaacagaagtaca----tgttttggctctac 60
          ||||||||| ||||||||||||||| | | |||||||  | |    |||| |||||||||
Sbjct: 5  gggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggctctac 64

                                 
Query: 61 ccatgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 65 tcatgcactgcctcttccctggc 87




>46159_miR408:micropc
          Length = 87

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 70/83 (84%), Gaps = 4/83 (4%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaacaggcagagcatggatggagctactaacagaagtaca----tgttttggctctac 60
          ||||||||| ||||||||||||||| | | |||||||  | |    |||| |||||||||
Sbjct: 5  gggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggctctac 64

                                 
Query: 61 ccatgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 65 tcatgcactgcctcttccctggc 87




>45531_miR408:micropc
          Length = 89

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 70/83 (84%), Gaps = 4/83 (4%)
 Strand = Plus / Plus

                                                                      
Query: 5  gggaacaggcagagcatggatggagctactaacagaagtaca----tgttttggctctac 60
          ||||||||| ||||||||||||||| | | |||||||  | |    |||| |||||||||
Sbjct: 6  gggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggctctac 65

                                 
Query: 61 ccatgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 66 tcatgcactgcctcttccctggc 88




>45949_miR408:micropc
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
          |||| ||||||||| ||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 aggcagagcatggatggagcta 32
          ||||||||||||||||||||||
Sbjct: 10 aggcagagcatggatggagcta 31




>45551_miR408:micropc
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
          |||| ||||||||| ||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 aggcagagcatggatggagcta 32
          ||||||||||||||||||||||
Sbjct: 10 aggcagagcatggatggagcta 31




>45860_miR408:micropc
          Length = 87

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 51 tgttgtggctccactcatgcactgcctcttccctggc 87




>45398_miR408:micropc
          Length = 89

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 52 tgttgtggctccactcatgcactgcctcttccctggc 88




>45090_miR408:micropc
          Length = 87

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
          |||| |||||| || ||||||||||||||||||||||
Sbjct: 51 tgttgtggctccactcatgcactgcctcttccctggc 87




>45394_miR408:micropc
          Length = 112

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 62  catgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 90  catgcactgcctcttccctggc 111




>44968_miR408:micropc
          Length = 110

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 62  catgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 89  catgcactgcctcttccctggc 110




>44861_miR408:micropc
          Length = 121

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 62  catgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 99  catgcactgcctcttccctggc 120




>44821_miR408:micropc
          Length = 119

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 62  catgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 98  catgcactgcctcttccctggc 119