miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46471_miR399:micropc
          Length = 90

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcgactctcccttggcaaacggatgatgatcactattcaccatgcaaattaatgcataa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  ggcgactctcccttggcaaacggatgatgatcactattcaccatgcaaattaatgcataa 62

                                    
Query: 61 tctgctttgccaaaggagaattgccc 86
          ||||||||||||||||||||||||||
Sbjct: 63 tctgctttgccaaaggagaattgccc 88




>46173_miR399:micropc
          Length = 86

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcgactctcccttggcaaacggatgatgatcactattcaccatgcaaattaatgcataa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggcgactctcccttggcaaacggatgatgatcactattcaccatgcaaattaatgcataa 60

                                    
Query: 61 tctgctttgccaaaggagaattgccc 86
          ||||||||||||||||||||||||||
Sbjct: 61 tctgctttgccaaaggagaattgccc 86




>45711_miR399:micropc
          Length = 90

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcgactctcccttggcaaacggatgatgatcactattcaccatgcaaattaatgcataa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  ggcgactctcccttggcaaacggatgatgatcactattcaccatgcaaattaatgcataa 62

                                    
Query: 61 tctgctttgccaaaggagaattgccc 86
          ||||||||||||||||||||||||||
Sbjct: 63 tctgctttgccaaaggagaattgccc 88




>46746_miR399:micropc
          Length = 86

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 68 tgccaaaggagaattgccc 86
          |||||||||||||||||||
Sbjct: 66 tgccaaaggagaattgccc 84




>46699_miR399:micropc
          Length = 120

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 102 tgccaaaggagaattgccc 120




>46617_miR399:micropc
          Length = 122

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 103 tgccaaaggagaattgccc 121




>46409_miR399:micropc
          Length = 112

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 93  tgccaaaggagaattgccc 111




>46133_miR399:micropc
          Length = 124

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 104 tgccaaaggagaattgccc 122




>45856_miR399:micropc
          Length = 124

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 104 tgccaaaggagaattgccc 122




>45532_miR399:micropc
          Length = 114

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 94  tgccaaaggagaattgccc 112




>45456_miR399:micropc
          Length = 110

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 92  tgccaaaggagaattgccc 110




>45403_miR399:micropc
          Length = 84

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 68 tgccaaaggagaattgccc 86
          |||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccc 83




>45183_miR399:micropc
          Length = 114

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  tgccaaaggagaattgccc 86
           |||||||||||||||||||
Sbjct: 94  tgccaaaggagaattgccc 112




>45072_miR399:micropc
          Length = 86

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 68 tgccaaaggagaattgccc 86
          |||||||||||||||||||
Sbjct: 66 tgccaaaggagaattgccc 84




>45028_miR399:micropc
          Length = 84

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 68 tgccaaaggagaattgccc 86
          |||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccc 83