miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46761_miR398:micropc
Length = 133
Score = 260 bits (131), Expect = 2e-70
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1 aggagtgatcctgagaacagagggtggcgttggcttaaatttgatttgcattgctgctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aggagtgatcctgagaacagagggtggcgttggcttaaatttgatttgcattgctgctgc 61
Query: 61 ctgctcctgccatacattaaatcaaaaagattgtatgtggccaacgcaccttgtgttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctgctcctgccatacattaaatcaaaaagattgtatgtggccaacgcaccttgtgttctc 121
Query: 121 aggtcacccct 131
|||||||||||
Sbjct: 122 aggtcacccct 132
>46328_miR398:micropc
Length = 138
Score = 170 bits (86), Expect = 2e-43
Identities = 127/138 (92%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 1 aggagtgatcctgagaacagagggtggcgttggcttaaatttgattt-gcattgctgctg 59
|||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 aggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgctg 60
Query: 60 cctgctcctgccat-----acattaaatcaaaa-agattgtatgtggccaacgcaccttg 113
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 61 cctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcaccttg 120
Query: 114 tgttctcaggtcacccct 131
||||||||||||||||||
Sbjct: 121 tgttctcaggtcacccct 138
>45871_miR398:micropc
Length = 140
Score = 170 bits (86), Expect = 2e-43
Identities = 127/138 (92%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 1 aggagtgatcctgagaacagagggtggcgttggcttaaatttgattt-gcattgctgctg 59
|||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgctg 61
Query: 60 cctgctcctgccat-----acattaaatcaaaa-agattgtatgtggccaacgcaccttg 113
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 62 cctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcaccttg 121
Query: 114 tgttctcaggtcacccct 131
||||||||||||||||||
Sbjct: 122 tgttctcaggtcacccct 139
>46499_miR398:micropc
Length = 67
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 cttgtgttctcaggtcacccct 131
||||||||||||||||||||||
Sbjct: 45 cttgtgttctcaggtcacccct 66
>45288_miR398:micropc
Length = 65
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 cttgtgttctcaggtcacccct 131
||||||||||||||||||||||
Sbjct: 44 cttgtgttctcaggtcacccct 65
>46478_miR398:micropc
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 85 ttgtgttctcaggtcacccct 105
>46384_miR398:micropc
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 86 ttgtgttctcaggtcacccct 106
>46357_miR398:micropc
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>46310_miR398:micropc
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 92 ttgtgttctcaggtcacccct 112
>46301_miR398:micropc
Length = 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 91 ttgtgttctcaggtcacccct 111
>46128_miR398:micropc
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>45917_miR398:micropc
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 120 ttgtgttctcaggtcacccct 140
>45772_miR398:micropc
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 71 ttgtgttctcaggtcacccct 91
>45602_miR398:micropc
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 122 ttgtgttctcaggtcacccct 142
>45427_miR398:micropc
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccct 94
>45412_miR398:micropc
Length = 143
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 122 ttgtgttctcaggtcacccct 142
>45213_miR398:micropc
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 120 ttgtgttctcaggtcacccct 140
>45118_miR398:micropc
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>45083_miR398:micropc
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 71 ttgtgttctcaggtcacccct 91
>44964_miR398:micropc
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 ttgtgttctcaggtcacccct 131
|||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccct 94
>46703_miR398:micropc
Length = 149
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tgtgttctcaggtcacccct 131
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>46124_miR398:micropc
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tgtgttctcaggtcacccct 131
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>46028_miR398:micropc
Length = 150
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tgtgttctcaggtcacccct 131
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>45706_miR398:micropc
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tgtgttctcaggtcacccct 131
||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccct 106
>45380_miR398:micropc
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tgtgttctcaggtcacccct 131
||||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcacccct 107
>45370_miR398:micropc
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tgtgttctcaggtcacccct 131
||||||||||||||||||||
Sbjct: 76 tgtgttctcaggtcacccct 95
