miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45881_miR482:micropc
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 62
Query: 61 tcccatt 67
|||||||
Sbjct: 63 tcccatt 69
>46769_miR482:micropc
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatgggagagtatgcaagaagaaaaaattcatgatttaatattccttcttgcctactcc 60
Query: 61 tcccatt 67
|||||||
Sbjct: 61 tcccatt 67
>45979_miR482:micropc
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3 agatgggagagtatgcaagaagaaaaaattcatgatttaatattccttcttgcctactcc 62
Query: 61 tcccatt 67
|||||||
Sbjct: 63 tcccatt 69
>46388_miR482:micropc
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 3 agatgggagagtatgcaagaaggaaaaaatcatgatttaatatcccttcttgcctactcc 62
Query: 61 tcccatt 67
|||||||
Sbjct: 63 tcccatt 69
>46068_miR482:micropc
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatatctcttcttgcctactcc 60
Query: 61 tcccatt 67
|||||||
Sbjct: 61 tcccatt 67
>45511_miR482:micropc
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 3 agatgggagagtatgcaagaaggaaaaaatcatgatttaatatcccttcttgcctactcc 62
Query: 61 tcccatt 67
|||||||
Sbjct: 63 tcccatt 69
>45435_miR482:micropc
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatattccttcttgcctactcc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 agatgggagagtatgcaagaaggaaaaattcatgatttaatatctcttcttgcctactcc 60
Query: 61 tcccatt 67
|||||||
Sbjct: 61 tcccatt 67
>45537_miR482:micropc
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 ttccttcttgcctactcctcccatt 67
||||||||| |||||||||||||||
Sbjct: 55 ttccttctttcctactcctcccatt 79
>44917_miR482:micropc
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 ttccttcttgcctactcctcccatt 67
||||||||| |||||||||||||||
Sbjct: 55 ttccttctttcctactcctcccatt 79
