miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46817_miR162:micropc
Length = 93
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaat 61
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 62 acatgaatcgatcgataaacctctgcatcca 92
>46511_miR162:micropc
Length = 89
Score = 101 bits (51), Expect = 8e-23
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaat 60
|||||||||||||||||||||| ||| || ||||||||||||| || ||||||||| |
Sbjct: 1 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa-taacacaaa-t 58
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 59 acatgaatcgatcgataaacctctgcatcca 89
>45545_miR162:micropc
Length = 91
Score = 101 bits (51), Expect = 8e-23
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaat 60
|||||||||||||||||||||| ||| || ||||||||||||| || ||||||||| |
Sbjct: 2 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa-taacacaaa-t 59
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 60 acatgaatcgatcgataaacctctgcatcca 90
>46504_miR162:micropc
Length = 90
Score = 71.9 bits (36), Expect = 7e-14
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacacaaaa 59
|||||||||||||||||||||| ||| || | |||||||||||||| || ||||||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaat-tagcacaaac 59
Query: 60 tacatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 60 -acatgaatcgatcgataaacctctgcatcca 90
>46039_miR162:micropc
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacacaaaa 59
|||||||||||||||||||||| ||| || | |||||||||||||| || ||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaat-tagcacaaac 60
Query: 60 tacatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 -acatgaatcgatcgataaacctctgcatcca 91
>46549_miR162:micropc
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 acatgaatcgatcgataaacctctgcatcca 91
>45903_miR162:micropc
Length = 90
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||||||
Sbjct: 60 acatgaatcgatcgataaacctctgcatcca 90
>46676_miR162:micropc
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatcca 91
||||||||||||||||||||||||||||||
Sbjct: 67 catgaatcgatcgataaacctctgcatcca 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatca 23
|||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatca 24
>46394_miR162:micropc
Length = 95
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatcca 91
||||||||||||||||||||||||||||||
Sbjct: 66 catgaatcgatcgataaacctctgcatcca 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatca 23
|||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatca 23
>46364_miR162:micropc
Length = 95
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatcca 91
||||||||||||||||||||||||||||||
Sbjct: 66 catgaatcgatcgataaacctctgcatcca 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatca 23
|||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatca 23
>44934_miR162:micropc
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatcca 91
||||||||||||||||||||||||||||||
Sbjct: 67 catgaatcgatcgataaacctctgcatcca 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatca 23
|||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatca 24
>46557_miR162:micropc
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
>46457_miR162:micropc
Length = 109
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||
Sbjct: 83 gaatcgatcgataaacctctgcatcca 109
>46456_miR162:micropc
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
||||||| |||||||||||||||||||||||
Sbjct: 58 acatgaaccgatcgataaacctctgcatcca 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 ggaggcagcggttcatcgatc 22
|||||||||||||||||||||
Sbjct: 4 ggaggcagcggttcatcgatc 24
>46090_miR162:micropc
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||
Sbjct: 71 gaatcgatcgataaacctctgcatcca 97
>46026_miR162:micropc
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
|||||||||| ||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatcca 86
>45991_miR162:micropc
Length = 108
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||
Sbjct: 81 gaatcgatcgataaacctctgcatcca 107
>45901_miR162:micropc
Length = 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||
Sbjct: 84 gaatcgatcgataaacctctgcatcca 110
>45749_miR162:micropc
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatcca 98
>45283_miR162:micropc
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 acatgaatcgatcgataaacctctgcatcca 91
||||||| |||||||||||||||||||||||
Sbjct: 57 acatgaaccgatcgataaacctctgcatcca 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 ggaggcagcggttcatcgatc 22
|||||||||||||||||||||
Sbjct: 3 ggaggcagcggttcatcgatc 23
>44845_miR162:micropc
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||||||||||||||||
Sbjct: 80 gaatcgatcgataaacctctgcatcca 106
>45757_miR162:micropc
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatcca 91
||||||||| ||||||||||||||||||||
Sbjct: 57 catgaatcggtcgataaacctctgcatcca 86
>45617_miR162:micropc
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 catgaatcgatcgataaacctctgcatcca 91
||||||||| ||||||||||||||||||||
Sbjct: 58 catgaatcggtcgataaacctctgcatcca 87
>46792_miR162:micropc
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 57 gaatcggtcgataaacctctgcatcca 83
>46628_miR162:micropc
Length = 136
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
>46470_miR162:micropc
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
>46169_miR162:micropc
Length = 136
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
>46096_miR162:micropc
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatcca 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
>45868_miR162:micropc
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
>45605_miR162:micropc
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
>45416_miR162:micropc
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 113 gaatcggtcgataaacctctgcatcca 139
>45338_miR162:micropc
Length = 112
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||| ||||||||||||
Sbjct: 86 gaatcgatcgataagcctctgcatcca 112
>45279_miR162:micropc
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||||||||||| ||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatcca 113
>45197_miR162:micropc
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 113 gaatcggtcgataaacctctgcatcca 139
>45084_miR162:micropc
Length = 136
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
>44984_miR162:micropc
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 58 gaatcggtcgataaacctctgcatcca 84
>44920_miR162:micropc
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
>44890_miR162:micropc
Length = 141
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 114 gaatcggtcgataaacctctgcatcca 140
>44807_miR162:micropc
Length = 141
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gaatcgatcgataaacctctgcatcca 91
|||||| ||||||||||||||||||||
Sbjct: 114 gaatcggtcgataaacctctgcatcca 140
>45921_miR162:micropc
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 gatcgataaacctctgcatcca 91
||||||||||||||||||||||
Sbjct: 88 gatcgataaacctctgcatcca 109
>45508_miR162:micropc
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 gatcgataaacctctgcatcca 91
||||||||||||||||||||||
Sbjct: 87 gatcgataaacctctgcatcca 108
