miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46780_miR1128:micropc
Length = 117
Score = 220 bits (111), Expect = 2e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 60
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 117
>45821_miR1128:micropc
Length = 117
Score = 220 bits (111), Expect = 2e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 60
Query: 62 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 117
>46213_miR1133:micropc
Length = 120
Score = 103 bits (52), Expect = 3e-23
Identities = 102/118 (86%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
||||||||||| |||| ||||| ||||||| |||| |||||| |||| ||| || |||
Sbjct: 119 atactccctccatccggaaatacttgtcttaaaaatagatgtatgtagaatta-ttttag 61
Query: 61 ttatagatacatccattntatttatttctaggacaagtatttccggacggagggagta 118
||||| ||||| ||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 60 ttataaatacacccattttatttatttctaggacaagtattttcggacggatggagta 3
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 83 tatttctaggacaagtatttccggacggagggagta 118
||||| || |||||||||||||||| ||||||||||
Sbjct: 83 tatttttaagacaagtatttccggatggagggagta 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtc 28
||||||| |||||||||||||| |||||
Sbjct: 2 atactccatccgtccgaaaatacttgtc 29
>45634_miR1133:micropc
Length = 120
Score = 69.9 bits (35), Expect = 4e-13
Identities = 101/120 (84%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||||||||||||||| ||||| ||||||| ||||||||| | || ||| |||
Sbjct: 1 atactccctccgtccgaaaatacttgtcatcgaaatagatgtatctana-tttattttag 59
Query: 61 ttata-gatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
|| || |||||||||||| | || ||| | ||||||||||||||||| |||||||||
Sbjct: 60 ttttacgatacatccattttcatcccttttgatgacaagtatttccggaccgagggagta 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 83 tatttctaggacaagtatttccggacggagggagta 118
|||||| | ||||||||||| |||||||||||||||
Sbjct: 37 tatttcgatgacaagtattttcggacggagggagta 2
>45127_miR1133:micropc
Length = 120
Score = 69.9 bits (35), Expect = 4e-13
Identities = 101/120 (84%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||||||||||||||| ||||| ||||||| ||||||||| | || ||| |||
Sbjct: 1 atactccctccgtccgaaaatacttgtcatcgaaatagatgtatctana-tttattttag 59
Query: 61 ttata-gatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
|| || |||||||||||| | || ||| | ||||||||||||||||| |||||||||
Sbjct: 60 ttttacgatacatccattttcatcccttttgatgacaagtatttccggaccgagggagta 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 83 tatttctaggacaagtatttccggacggagggagta 118
|||||| | ||||||||||| |||||||||||||||
Sbjct: 37 tatttcgatgacaagtattttcggacggagggagta 2
>45057_miR1133:micropc
Length = 120
Score = 69.9 bits (35), Expect = 4e-13
Identities = 101/120 (84%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 1 atactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntag 60
|||||||||||||||||||||| ||||| ||||||| ||||||||| | || ||| |||
Sbjct: 1 atactccctccgtccgaaaatacttgtcatcgaaatagatgtatctana-tttattttag 59
Query: 61 ttata-gatacatccattnt-atttatttctaggacaagtatttccggacggagggagta 118
|| || |||||||||||| | || ||| | ||||||||||||||||| |||||||||
Sbjct: 60 ttttacgatacatccattttcatcccttttgatgacaagtatttccggaccgagggagta 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 83 tatttctaggacaagtatttccggacggagggagta 118
|||||| | ||||||||||| |||||||||||||||
Sbjct: 37 tatttcgatgacaagtattttcggacggagggagta 2
>45304_miR1128:micropc
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctagacttaattntagt 61
|||||||||||| || || || ||||| | |||||||||||||||||| | ||| ||||
Sbjct: 108 tactccctccgttcggaattacttgtcgtagaaatgaatgtatctaga-tgtattttagt 50
Query: 62 tatagatacatccatt 77
| ||||||||||||||
Sbjct: 49 tctagatacatccatt 34
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 84 atttctaggacaagtatttccggacggagggagta 118
||||||| |||||||| ||||| ||||||||||||
Sbjct: 74 atttctacgacaagtaattccgaacggagggagta 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatgaatgtatctaga 49
|||||||||||| ||||| || |||||| ||||| |||||||||||
Sbjct: 2 tactccctccgttcgaaattacttgtctcgaaaatggatgtatctaga 49
>46044_miR1128:micropc
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 102 gacaagtatttccggacggagggagta 128
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 2 tactccctccgtccgaaaatatttgtc 28
>45461_miR1128:micropc
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 102 gacaagtatttccggacggagggagta 128
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 2 tactccctccgtccgaaaatatttgtc 28
>44841_miR1128:micropc
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
|||||||||||||||||||||||||||
Sbjct: 102 gacaagtatttccggacggagggagta 128
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 2 tactccctccgtccgaaaatatttgtc 28
>45233_miR1128:micropc
Length = 133
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatg 37
||||||||||||||| ||||||||||| || |||||
Sbjct: 4 tactccctccgtccggaaatagttgtcatcaaaatg 39
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 2 tactccctccgtccgaaaatagttgtcttcgaaatg 37
||||||||||||||||||||| ||||| || |||||
Sbjct: 130 tactccctccgtccgaaaatacttgtcatcaaaatg 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||| |||||||||||||||||||||
Sbjct: 30 gacaactatttccggacggagggagta 4
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 104 gacaagtattttcggacggagggagta 130
>46650_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>46443_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>46231_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>46218_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>46180_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>46136_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45836_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45824_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45818_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45729_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45575_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45466_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45150_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45094_miR1128:micropc
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 gacaagtatttccggacggagggagta 118
||||||||||| |||||||||||||||
Sbjct: 27 gacaagtattttcggacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tactccctccgtccgaaaatagttgtc 28
||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgtccgaaaatacttgtc 27
>45621_miR1127:micropc
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 54 attntagttatagatacatccattntatttatttctaggacaagtatttccggacggagg 113
||| ||||| |||||||||||||| | | |||| | |||||||| ||||| |||||||
Sbjct: 49 attttagttgtagatacatccatttttatcatttttgtgacaagtaattccgaacggagg 108
Query: 114 ga 115
||
Sbjct: 109 ga 110
