miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45392_miR172:micropc
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatg 60

                                      
Query: 61 ggtaatgagaatcttgatgatgctgcat 88
          ||||||||||||||||||||||||||||
Sbjct: 61 ggtaatgagaatcttgatgatgctgcat 88




>46487_miR172:micropc
          Length = 86

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 60

                                    
Query: 62 gtaatgagaatcttgatgatgctgca 87
          ||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86




>44791_miR172:micropc
          Length = 86

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 60

                                    
Query: 62 gtaatgagaatcttgatgatgctgca 87
          ||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86




>46413_miR172:micropc
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1  gtgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatg 60

                                      
Query: 61 ggtaatgagaatcttgatgatgctgcat 88
          ||||||||||||||||||||||||||||
Sbjct: 61 ggtaatgagaatcttgatgatgctgcat 88




>46305_miR172:micropc
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1  gtgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatg 60

                                      
Query: 61 ggtaatgagaatcttgatgatgctgcat 88
          ||||||||||||||||||||||||||||
Sbjct: 61 ggtaatgagaatcttgatgatgctgcat 88




>45569_miR172:micropc
          Length = 86

 Score =  163 bits (82), Expect = 3e-41
 Identities = 85/86 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 61
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60

                                    
Query: 62 gtaatgagaatcttgatgatgctgca 87
          ||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86




>44830_miR172:micropc
          Length = 86

 Score =  163 bits (82), Expect = 3e-41
 Identities = 85/86 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 61
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1  tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60

                                    
Query: 62 gtaatgagaatcttgatgatgctgca 87
          ||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86




>44866_miR172:micropc
          Length = 128

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 65  atgagaatcttgatgatgctgcat 88
           ||||||||||||||||||||||||
Sbjct: 105 atgagaatcttgatgatgctgcat 128




>46569_miR172:micropc
          Length = 126

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 65  atgagaatcttgatgatgctgca 87
           |||||||||||||||||||||||
Sbjct: 104 atgagaatcttgatgatgctgca 126




>46620_miR172:micropc
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 67  gagaatcttgatgatgctgcat 88
           ||||||||||||||||||||||
Sbjct: 85  gagaatcttgatgatgctgcat 106




>46276_miR172:micropc
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  tgagaatcttgatgatgctgca 87
           ||||||||||||||||||||||
Sbjct: 83  tgagaatcttgatgatgctgca 104




>46108_miR172:micropc
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  tgagaatcttgatgatgctgca 87
           ||||||||||||||||||||||
Sbjct: 83  tgagaatcttgatgatgctgca 104




>45323_miR172:micropc
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  tgagaatcttgatgatgctgca 87
           ||||||||||||||||||||||
Sbjct: 83  tgagaatcttgatgatgctgca 104




>46277_miR172:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  gagaatcttgatgatgctgca 87
           |||||||||||||||||||||
Sbjct: 84  gagaatcttgatgatgctgca 104




>45834_miR172:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  gagaatcttgatgatgctgca 87
           |||||||||||||||||||||
Sbjct: 84  gagaatcttgatgatgctgca 104




>45550_miR172:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  gagaatcttgatgatgctgca 87
           |||||||||||||||||||||
Sbjct: 84  gagaatcttgatgatgctgca 104




>45458_miR172:micropc
          Length = 104

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  gagaatcttgatgatgctgca 87
           |||||||||||||||||||||
Sbjct: 84  gagaatcttgatgatgctgca 104