miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45342_miR809:micropc
Length = 100
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 61
Query: 61 attcattaacattaatatgaatatgggaaatgttagaa 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 attcattaacattaatatgaatatgggaaatgttagaa 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| |||||||||||| ||| ||| ||||||||| |||||| ||||||||| |
Sbjct: 93 catttcccatattcatattaatgttaatgaatctagatggatatatatgtctagattcgt 34
Query: 67 taacattaatatgaatatgggaaatg 92
|| ||| |||||||||||| ||||||
Sbjct: 33 tagcatcaatatgaatatgagaaatg 8
>45708_miR809:micropc
Length = 100
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 8 atttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatt 67
|||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 92 atttctcacatttatattgatgctaatgaatctagacatatatatctatctagattcatt 33
Query: 68 aacattaatatgaatatgggaaatgttagaa 98
|| || |||||||||||| |||||||||||
Sbjct: 32 aatatcaatatgaatatgaaaaatgttagaa 2
Score = 63.9 bits (32), Expect = 2e-11
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
||||| |||||||||||||||| ||| ||||||||| | |||||| |||||||||||
Sbjct: 8 catttttcatattcatattgatattaatgaatctagatagatatatatgtctagattcat 67
Query: 67 taacattaatatgaatatgggaaatgttagaa 98
|| ||| ||||| ||| || ||||| ||||||
Sbjct: 68 tagcatcaatataaatgtgagaaattttagaa 99
>46801_miR809:micropc
Length = 110
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 21 atattgatgctaacgaatctagacatatatatccatctagattcattaacattaatatga 80
||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 79 atattgatgttaatgaatctaaacatatatatctatctagattcattaacattaatatga 20
Query: 81 atatgggaaatgttagaa 98
|| ||||||||| |||||
Sbjct: 19 atgtgggaaatgatagaa 2
Score = 48.1 bits (24), Expect = 1e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || ||||||||| ||| ||| ||||||||| | |||||| | |||||||||
Sbjct: 8 catttcccacattcatattaatgttaatgaatctagatagatatatatgtttagattcat 67
Query: 67 taacattaatat 78
|||||| |||||
Sbjct: 68 taacatcaatat 79
>46637_miR446:micropc
Length = 80
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 18 ttcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaata 77
|||||||| ||| ||| ||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 8 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 67
Query: 78 tgaatatgggaaa 90
|||||||||||||
Sbjct: 68 tgaatatgggaaa 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 9 tttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatta 68
|||| |||||||||||||||| ||| |||||||| | |||||| |||||||||||||
Sbjct: 80 tttcccatattcatattgatgttaatgaatctagctagatatatatgtctagattcatta 21
Query: 69 acattaatatgaa 81
|||||||||||||
Sbjct: 20 acattaatatgaa 8
>46080_miR809:micropc
Length = 99
Score = 85.7 bits (43), Expect = 5e-18
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
|||| |||||||||| ||||||||||||| ||| |||| |||||||||||||| ||||||
Sbjct: 98 ttctagcatttctcacattcatattgatggtaatgaatatagacatatatatctatctag 39
Query: 61 attcattaacattaatatgaatatgggaaat 91
| |||| | ||| ||||||||| ||||||||
Sbjct: 38 a-tcatcagcatcaatatgaatgtgggaaat 9
Score = 46.1 bits (23), Expect = 5e-06
Identities = 75/91 (82%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 8 atttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatt 67
||||| || ||||||||||||||| | | ||||||| | |||||| |||| |||||||
Sbjct: 9 atttcccacattcatattgatgctgatg-atctagatagatatatatgtctatattcatt 67
Query: 68 aacattaatatgaatatgggaaatgttagaa 98
| ||| ||||||||| || |||||| |||||
Sbjct: 68 accatcaatatgaatgtgagaaatgctagaa 98
>45707_miR809:micropc
Length = 99
Score = 85.7 bits (43), Expect = 5e-18
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
|||| |||||||||| ||||||||||||| ||| |||| |||||||||||||| ||||||
Sbjct: 98 ttctagcatttctcacattcatattgatggtaatgaatatagacatatatatctatctag 39
Query: 61 attcattaacattaatatgaatatgggaaat 91
| |||| | ||| ||||||||| ||||||||
Sbjct: 38 a-tcatcagcatcaatatgaatgtgggaaat 9
Score = 46.1 bits (23), Expect = 5e-06
Identities = 75/91 (82%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 8 atttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatt 67
||||| || ||||||||||||||| | | ||||||| | |||||| |||| |||||||
Sbjct: 9 atttcccacattcatattgatgctgatg-atctagatagatatatatgtctatattcatt 67
Query: 68 aacattaatatgaatatgggaaatgttagaa 98
| ||| ||||||||| || |||||| |||||
Sbjct: 68 accatcaatatgaatgtgagaaatgctagaa 98
>46318_miR446:micropc
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 15 atattcatattgatgctaacgaatctagacatatatatccatctagattcattaacatta 74
||||||||||||| | ||| |||||||||||||||||| || ||||||||||||||| |
Sbjct: 78 atattcatattgacgttaataaatctagacatatatatctatatagattcattaacatca 19
Query: 75 atatgaatatgggaaatg 92
||| |||||||||||||
Sbjct: 18 ttataaatatgggaaatg 1
Score = 52.0 bits (26), Expect = 8e-08
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| |||||| ||| ||||| ||| ||||||| | | |||||| |||||||| ||
Sbjct: 1 catttcccatatttataatgatgttaatgaatctatatagatatatatgtctagatttat 60
Query: 67 taacattaatatgaatatgggaaatg 92
|||| | ||||||||||| |||||||
Sbjct: 61 taacgtcaatatgaatataggaaatg 86
>46833_miR446:micropc
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 21 atattgatgctaacgaatctagacatatatatccatctagattcattaacattaatatga 80
||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 10 atattgatgttaatgaatctagacatacatatctatctaaattcattaacatcaatatga 69
Query: 81 atatgggaaatg 92
|| ||| |||||
Sbjct: 70 atgtggaaaatg 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 17 attcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaat 76
||||||||||||| ||| |||| |||| | |||| | ||||||||||||||||| |||
Sbjct: 71 attcatattgatgttaatgaatttagatagatatgtatgtctagattcattaacatcaat 12
Query: 77 at 78
||
Sbjct: 11 at 10
>45522_miR809:micropc
Length = 100
Score = 75.8 bits (38), Expect = 5e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 25 tgatgctaacgaatctagacatatatatccatctagattcattaacattaatatgaatat 84
||||| ||| |||||||||||||| |||| |||||||||||||||||| || | |||| |
Sbjct: 26 tgatgttaatgaatctagacatatgtatctatctagattcattaacatcaacacgaatgt 85
Query: 85 gggaaatgttagaa 98
|||||||| |||||
Sbjct: 86 gggaaatgatagaa 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || |||| | |||||| ||| ||||||||| | ||| || |||||||||||
Sbjct: 93 catttcccacattcgtgttgatgttaatgaatctagatagatacatatgtctagattcat 34
Query: 67 taacattaatatgaatatgggaaatgttagaa 98
|||||| | || |||| ||| ||||| |||||
Sbjct: 33 taacatcattacgaatgtggaaaatgctagaa 2
>46775_miR808:micropc
Length = 98
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 58 tagattcattaacattaatatgaatatgggaaatgttagaa 98
||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 58 tagattcattaacatcaatatgaatgtgggaaatgttagaa 98
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 92 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 34
Query: 67 taacat 72
||||||
Sbjct: 33 taacat 28
>45913_miR809:micropc
Length = 100
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 58 tagattcattaacattaatatgaatatgggaaatgttagaa 98
||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 59 tagattcattaacatcaatatgaatgtgggaaatgttagaa 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 93 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 35
Query: 67 taacat 72
||||||
Sbjct: 34 taacat 29
>46060_miR809:micropc
Length = 87
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 56 tctagattcattaacattaatatgaatatgggaaatgttagaa 98
||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 44 tctagattcattaacatcaatatgaatatggaaaatgctagaa 2
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagac 44
|||| |||||| |||||||||||||||| ||| ||||||||||
Sbjct: 2 ttctagcattttccatattcatattgatgttaatgaatctagac 45
>45995_miR446:micropc
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 86 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 28
Query: 67 taacat 72
||||||
Sbjct: 27 taacat 22
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 tagattcattaacattaatatgaatatgggaaatg 92
||||||||||||||| ||||||||| |||||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
>45717_miR446:micropc
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 86 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 28
Query: 67 taacat 72
||||||
Sbjct: 27 taacat 22
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 tagattcattaacattaatatgaatatgggaaatg 92
||||||||||||||| ||||||||| |||||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
>45176_miR446:micropc
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 86 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 28
Query: 67 taacat 72
||||||
Sbjct: 27 taacat 22
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 tagattcattaacattaatatgaatatgggaaatg 92
||||||||||||||| ||||||||| |||||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
>45731_miR446:micropc
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 17 attcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaat 76
|||||||| ||| ||| ||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 11 attcatatagattttaatgaatctaaacatatatgtgtgtctagattcattaacatcaat 70
Query: 77 atgaatatgggaaatg 92
|||||| |||| ||||
Sbjct: 71 atgaatgtgggcaatg 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 17 attcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaat 76
||||||||||||| ||| ||||||||||| | |||| | |||||||||||| || ||
Sbjct: 76 attcatattgatgttaatgaatctagacacacatatatgtttagattcattaaaatctat 17
Query: 77 atgaat 82
||||||
Sbjct: 16 atgaat 11
>45998_miR446:micropc
Length = 53
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 ttctggcatttctcatattcatattgatg 29
|||| ||||||||||||||||||||||||
Sbjct: 29 ttctagcatttctcatattcatattgatg 1
>46670_miR809:micropc
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 56 tctagattcattaacattaatatgaatatgggaaatgttagaa 98
|||| |||||||||||| |||||||| |||| ||||||||||
Sbjct: 55 tctacattcattaacatatatatgaatgtgggtaatgttagaa 97
>46464_miR1132:micropc
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
|||| ||||| | ||||||||||| ||| ||| |||||||| ||||||||| | |||
Sbjct: 26 ttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtttag 85
Query: 61 attcattaacattaatatgaatatggg 87
|||||||||| | |||| ||||||||
Sbjct: 86 attcattaacttctatataaatatggg 112
>45514_miR1132:micropc
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
|||| ||||| | ||||||||||| ||| ||| |||||||| ||||||||| | |||
Sbjct: 26 ttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtttag 85
Query: 61 attcattaacattaatatgaatatggg 87
|||||||||| | |||| ||||||||
Sbjct: 86 attcattaacttctatataaatatggg 112
>45099_miR1132:micropc
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
|||| ||||| | ||||||||||| ||| ||| |||||||| ||||||||| | |||
Sbjct: 26 ttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtttag 85
Query: 61 attcattaacattaatatgaatatggg 87
|||||||||| | |||| ||||||||
Sbjct: 86 attcattaacttctatataaatatggg 112
>44980_miR808:micropc
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 56 tctagattcattaacattaatatgaatatgggaaatgttagaa 98
|||| |||||||||||| |||||||| |||| ||||||||||
Sbjct: 55 tctacattcattaacatatatatgaatgtgggtaatgttagaa 97
>46468_miR446:micropc
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 ttcattaacattaatatgaatatgggaaat 91
||||||||||| ||||||||| ||||||||
Sbjct: 48 ttcattaacatcaatatgaatgtgggaaat 77
>46336_miR809:micropc
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatat 50
|||| |||||| ||| ||||||||| || ||| ||||||||||||||||
Sbjct: 97 ttctagcatttttcacattcatatttatattaatgaatctagacatatat 48
>45839_miR809:micropc
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatat 50
|||| |||||| ||| ||||||||| || ||| ||||||||||||||||
Sbjct: 97 ttctagcatttttcacattcatatttatattaatgaatctagacatatat 48
>45260_miR819:micropc
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/73 (83%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 14 catattcatattgatgctaacgaatctagacatatatatccatctagattcattaacatt 73
|||||| |||| |||| ||| |||| |||||| |||||| | |||||||||||||||
Sbjct: 93 catatttatatagatgttaatgaatatagacacatatatg--tttagattcattaacata 36
Query: 74 aatatgaatatgg 86
||||||||||||
Sbjct: 35 tatatgaatatgg 23
>45215_miR1120:micropc
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 7 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 66
|||| ||||||| ||||| |||| ||| |||| || ||| ||| || ||||||||||||
Sbjct: 114 cattgctcatatacatatagatgttaatgaatttaaacacataaatatatctagattcat 55
Query: 67 taacat 72
||||||
Sbjct: 54 taacat 49
>45075_miR819:micropc
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/73 (83%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 14 catattcatattgatgctaacgaatctagacatatatatccatctagattcattaacatt 73
|||||| |||| |||| ||| |||| |||||| |||||| | |||||||||||||||
Sbjct: 93 catatttatatagatgttaatgaatatagacacatatatg--tttagattcattaacata 36
Query: 74 aatatgaatatgg 86
||||||||||||
Sbjct: 35 tatatgaatatgg 23
