miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45414_miR530:micropc
Length = 141
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 61
Query: 61 tgatcgctatacgctagcttcttgcacacaatgttgttcctggtcccttcctgatcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgatcgctatacgctagcttcttgcacacaatgttgttcctggtcccttcctgatcccta 121
Query: 121 ggtgcagaggcagatgca 138
||||||||||||||||||
Sbjct: 122 ggtgcagaggcagatgca 139
>45181_miR1030:micropc
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
Query: 61 tgatcgctatacgctagcttcttgcacacaatgttgttcctggtcccttcctgatcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatcgctatacgctagcttcttgcacacaatgttgttcctggtcccttcctgatcccta 120
Query: 121 ggtgcagaggcagatgca 138
||||||||||||||||||
Sbjct: 121 ggtgcagaggcagatgca 138
>44806_miR1030:micropc
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
Query: 61 tgatcgctatacgctagcttcttgcacacaatgttgttcctggtcccttcctgatcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatcgctatacgctagcttcttgcacacaatgttgttcctggtcccttcctgatcccta 120
Query: 121 ggtgcagaggcagatgca 138
||||||||||||||||||
Sbjct: 121 ggtgcagaggcagatgca 138
>46704_miR530:micropc
Length = 137
Score = 194 bits (98), Expect = 1e-50
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 2 tgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgctt 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 62 gatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatcccta 120
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatcccta 119
Query: 121 ggtgcagaggcagatgca 138
||||| |||||||||||
Sbjct: 120 ggtgccaaggcagatgca 137
>46368_miR530:micropc
Length = 137
Score = 194 bits (98), Expect = 1e-50
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 2 tgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgctt 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 62 gatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatcccta 120
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatcccta 119
Query: 121 ggtgcagaggcagatgca 138
||||| |||||||||||
Sbjct: 120 ggtgccaaggcagatgca 137
>46346_miR530:micropc
Length = 137
Score = 194 bits (98), Expect = 1e-50
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 2 tgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgctt 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 62 gatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatcccta 120
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatcccta 119
Query: 121 ggtgcagaggcagatgca 138
||||| |||||||||||
Sbjct: 120 ggtgccaaggcagatgca 137
>45631_miR530:micropc
Length = 137
Score = 194 bits (98), Expect = 1e-50
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 2 tgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgctt 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 62 gatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatcccta 120
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatcccta 119
Query: 121 ggtgcagaggcagatgca 138
||||| |||||||||||
Sbjct: 120 ggtgccaaggcagatgca 137
>45023_miR530:micropc
Length = 137
Score = 194 bits (98), Expect = 1e-50
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 2 tgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgctt 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 62 gatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatcccta 120
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatcccta 119
Query: 121 ggtgcagaggcagatgca 138
||||| |||||||||||
Sbjct: 120 ggtgccaaggcagatgca 137
>44935_miR530:micropc
Length = 137
Score = 194 bits (98), Expect = 1e-50
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 2 tgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgctt 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 62 gatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatcccta 120
|||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatcccta 119
Query: 121 ggtgcagaggcagatgca 138
||||| |||||||||||
Sbjct: 120 ggtgccaaggcagatgca 137
>46019_miR1030:micropc
Length = 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ctgcatttgcacctgcacct 20
||||||||||||||||||||
Sbjct: 2 ctgcatttgcacctgcacct 21
>45875_miR1030:micropc
Length = 142
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ctgcatttgcacctgcacct 20
||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacct 20
>44837_miR1030:micropc
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ctgcatttgcacctgcacct 20
||||||||||||||||||||
Sbjct: 109 ctgcatttgcacctgcacct 90
