miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45797_miR1439:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||||||||||||||||||||
Sbjct: 26 tcatctattttggagcgaagggagta 1
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||| || |||||||||||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
Query: 71 tcatctattttggagcgaagggagta 96
|||||||||||||| || ||||||||
Sbjct: 61 tcatctattttggaacggagggagta 86
>45104_miR1439:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||||||||||||||||||||
Sbjct: 26 tcatctattttggagcgaagggagta 1
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||| || |||||||||||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
Query: 71 tcatctattttggagcgaagggagta 96
|||||||||||||| || ||||||||
Sbjct: 61 tcatctattttggaacggagggagta 86
>46754_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>46594_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>46493_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>46463_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>46315_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>46176_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>45675_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>45656_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>45535_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>44790_miR1439:micropc
Length = 86
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaactttagtacaaacttggg 60
Query: 71 tcatctattttggagcgaagggagta 96
||||| |||||||| || ||||||||
Sbjct: 61 tcatccattttggaacggagggagta 86
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||| |
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgag 27
Query: 71 tcatctattttggagcgaagggagta 96
||||||||| |||| || ||||||||
Sbjct: 26 tcatctattctggaacggagggagta 1
>46157_miR1439:micropc
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaacttta-gtacaaagttgg 69
||||||||| ||| |||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
Query: 70 gtcatctattttggagcgaagggagtat 97
|||| |||||||||| || |||||||||
Sbjct: 61 gtcacctattttggaacggagggagtat 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtat-taactttagtacaaagttgg 69
|||||||||||||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct: 87 tactccctccgttccaaaataggtgactcaactttgtaaatggaggtagtacaaagttgg 28
Query: 70 gtcatctattttg 82
|||||||||||||
Sbjct: 27 gtcatctattttg 15
>44862_miR1439:micropc
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaacttta-gtacaaagttgg 69
||||||||| ||| |||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
Query: 70 gtcatctattttggagcgaagggagtat 97
|||| |||||||||| || |||||||||
Sbjct: 61 gtcacctattttggaacggagggagtat 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtat-taactttagtacaaagttgg 69
|||||||||||||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct: 87 tactccctccgttccaaaataggtgactcaactttgtaaatggaggtagtacaaagttgg 28
Query: 70 gtcatctattttg 82
|||||||||||||
Sbjct: 27 gtcatctattttg 15
>45223_miR1137:micropc
Length = 51
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 38 ccaactttgtattaactttagtacaaagtt 67
||||||||||| ||||||||||||||||||
Sbjct: 47 ccaactttgtactaactttagtacaaagtt 18
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 40 aactttgtattaactttagtacaaagttgggtca 73
||||||||| ||| |||||||||||||||||||
Sbjct: 18 aactttgtactaaagttagtacaaagttgggtca 51
>46679_miR1439:micropc
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaata 31
|||||||||||||||||||||
Sbjct: 97 tactccctccgttccaaaata 77
>46347_miR1137:micropc
Length = 55
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ttagtacaaagttgggtcatc 75
|||||||||||||||||||||
Sbjct: 35 ttagtacaaagttgggtcatc 55
>45189_miR1439:micropc
Length = 78
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaata 31
|||||||||||||||||||||
Sbjct: 76 tactccctccgttccaaaata 56
>46433_miR1439:micropc
Length = 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaat 30
||||||||||||||||||||
Sbjct: 152 tactccctccgttccaaaat 133
