miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45925_miR1122:micropc
          Length = 52

 Score =  103 bits (52), Expect = 1e-23
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                              
Query: 3  tctagatacgatgtatagacacgttttagtgttagatacatctgtatctaga 54
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tctagatacgatgtatagacacgttttagtgttagatacatctgtatctaga 52

>46678_miR1122:micropc
          Length = 55

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 25 gttttagtgttagatacatctgtatctaga 54
          |||||||| ||||||||||| |||||||||
Sbjct: 26 gttttagtattagatacatccgtatctaga 55

>46006_miR1122:micropc
          Length = 55

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 25 gttttagtgttagatacatctgtatctaga 54
          |||||||| ||||||||||| |||||||||
Sbjct: 26 gttttagtattagatacatccgtatctaga 55

>45436_miR1122:micropc
          Length = 55

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 25 gttttagtgttagatacatctgtatctaga 54
          |||||||| ||||||||||| |||||||||
Sbjct: 26 gttttagtattagatacatccgtatctaga 55

>45109_miR1122:micropc
          Length = 55

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 25 gttttagtgttagatacatctgtatctaga 54
          |||||||| ||||||||||| |||||||||
Sbjct: 26 gttttagtattagatacatccgtatctaga 55

>45091_miR1122:micropc
          Length = 55

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 25 gttttagtgttagatacatctgtatctaga 54
          |||||||| ||||||||||| |||||||||
Sbjct: 26 gttttagtattagatacatccgtatctaga 55

>46814_miR1122:micropc
          Length = 55

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 22 cacgttttagtgttagatacatctgtatctaga 54
          ||||||||||| |||||||||||  ||||||||
Sbjct: 23 cacgttttagtattagatacatccatatctaga 55

>45977_miR1122:micropc
          Length = 55

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 22 cacgttttagtgttagatacatctgtatctaga 54
          ||||||||||| ||||||||| | |||||||||
Sbjct: 23 cacgttttagtattagatacacccgtatctaga 55

>45186_miR1122:micropc
          Length = 55

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 35 tagatacatctgtatctaga 54
          ||||||||||||||||||||
Sbjct: 36 tagatacatctgtatctaga 55