miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46040_miR168:micropc
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaaatcgggacctgcggccctgctcggaccggacagatcccaccttgcac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaaatcgggacctgcggccctgctcggaccggacagatcccaccttgcac 60
Query: 72 caaggga 78
|||||||
Sbjct: 61 caaggga 67
>46064_miR168:micropc
Length = 67
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaaatcgggacctgcggccctgctcggaccggacagatcccaccttgcac 71
|||||||||||| |||||||||||| ||| ||||||||| ||||||||||| ||||||||
Sbjct: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
Query: 72 caag 75
||||
Sbjct: 61 caag 64
>44880_miR168:micropc
Length = 67
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaaatcgggacctgcggccctgctcggaccggacagatcccaccttgcac 71
|||||||||||| |||||||||||| ||| ||||||||| ||||||||||| ||||||||
Sbjct: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
Query: 72 caag 75
||||
Sbjct: 61 caag 64
>46638_miR168:micropc
Length = 65
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/64 (84%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaaatcgggacctgcggccctgctcggaccggacagatcccaccttgcac 71
|||||||||||| ||||||||| || |||| | | ||| |||| |||||| ||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcccgccttgcac 58
Query: 72 caag 75
||||
Sbjct: 59 caag 62
>46420_miR168:micropc
Length = 65
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/64 (84%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaaatcgggacctgcggccctgctcggaccggacagatcccaccttgcac 71
|||||||||||| ||||||||| || |||| | | ||| |||| |||||| ||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcccgccttgcac 58
Query: 72 caag 75
||||
Sbjct: 59 caag 62
