miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45394_miR408:micropc
Length = 112
Score = 222 bits (112), Expect = 6e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 20 ggctgggaaaaggcagagcaagaatgtagctattgacagaaatggtgaagtgagaatgag 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgggaaaaggcagagcaagaatgtagctattgacagaaatggtgaagtgagaatgag 60
Query: 80 aggagagagatatctgttgtggctacgctcatgcactgcctcttccctggct 131
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggagagagatatctgttgtggctacgctcatgcactgcctcttccctggct 112
>44968_miR408:micropc
Length = 110
Score = 218 bits (110), Expect = 9e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 21 gctgggaaaaggcagagcaagaatgtagctattgacagaaatggtgaagtgagaatgaga 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgggaaaaggcagagcaagaatgtagctattgacagaaatggtgaagtgagaatgaga 60
Query: 81 ggagagagatatctgttgtggctacgctcatgcactgcctcttccctggc 130
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggagagagatatctgttgtggctacgctcatgcactgcctcttccctggc 110
>44861_miR408:micropc
Length = 121
Score = 95.6 bits (48), Expect = 9e-21
Identities = 103/121 (85%), Gaps = 9/121 (7%)
Strand = Plus / Plus
Query: 20 ggctgggaaaaggcagagcaagaatgtagctattgacagaaa-tggtgaagtgagaatga 78
||||||||| |||||| ||| ||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 1 ggctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatga 60
Query: 79 gaggagagagata--------tctgttgtggctacgctcatgcactgcctcttccctggc 130
|||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaggagagagagagagagagatctgttgtggctacgctcatgcactgcctcttccctggc 120
Query: 131 t 131
|
Sbjct: 121 t 121
>44821_miR408:micropc
Length = 119
Score = 91.7 bits (46), Expect = 1e-19
Identities = 101/119 (84%), Gaps = 9/119 (7%)
Strand = Plus / Plus
Query: 21 gctgggaaaaggcagagcaagaatgtagctattgacagaaa-tggtgaagtgagaatgag 79
|||||||| |||||| ||| ||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 1 gctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatgaa 60
Query: 80 aggagagagata--------tctgttgtggctacgctcatgcactgcctcttccctggc 130
|||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggagagagagagagagagatctgttgtggctacgctcatgcactgcctcttccctggc 119
>45398_miR408:micropc
Length = 89
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggct 131
||||||||||| | |||||||||||||||||||||||||
Sbjct: 51 ctgttgtggctccactcatgcactgcctcttccctggct 89
>45860_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggc 130
||||||||||| | ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
>45090_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggc 130
||||||||||| | ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
>46359_miR408:micropc
Length = 85
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 92 tctgttgtggctacgctcatgcactgcctcttccctggct 131
|||||| ||||| | |||||||||||||||||||||||||
Sbjct: 46 tctgttttggcttcactcatgcactgcctcttccctggct 85
>46309_miR408:micropc
Length = 83
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 92 tctgttgtggctacgctcatgcactgcctcttccctggc 130
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
>46155_miR408:micropc
Length = 83
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 92 tctgttgtggctacgctcatgcactgcctcttccctggc 130
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
>45531_miR408:micropc
Length = 89
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggct 131
||||||||||| |||||||||||||||||||||||||
Sbjct: 51 ctgttgtggctctactcatgcactgcctcttccctggct 89
>46728_miR408:micropc
Length = 87
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggc 130
||||||||||| ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
>46159_miR408:micropc
Length = 87
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggc 130
||||||||||| ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
>45949_miR408:micropc
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 94 tgttgtggctacgctcatgcactgcctcttccctggc 130
|||||||||| ||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
>45551_miR408:micropc
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 94 tgttgtggctacgctcatgcactgcctcttccctggc 130
|||||||||| ||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
>45814_miR408:micropc
Length = 85
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggct 131
|||||||||||||||||||||||
Sbjct: 63 catgcactgcctcttccctggct 85
>45593_miR408:micropc
Length = 85
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggct 131
|||||||||||||||||||||||
Sbjct: 63 catgcactgcctcttccctggct 85
>46505_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggc 130
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
>46401_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggc 130
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
>46052_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggc 130
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
>45726_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggc 130
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
