miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41894_hvu-MIR444b:mirbase
          Length = 121

 Score =  240 bits (121), Expect = 2e-64
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 62

                                                                       
Query: 62  cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 2

            
Query: 122 c 122
           |
Sbjct: 1   c 1




>42089_osa-MIR444d:mirbase
          Length = 143

 Score = 99.6 bits (50), Expect = 5e-22
 Identities = 104/121 (85%), Gaps = 2/121 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
           |||| ||||||||||||| |||||||||||||||||||||||||| ||| | ||  |  |
Sbjct: 132 ggaggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atca 75

                                                                       
Query: 62  cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
            | |  ||||||||  ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74  tctaatgattttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgccac 15

            
Query: 122 c 122
           |
Sbjct: 14  c 14




>42088_osa-MIR444d:mirbase
          Length = 143

 Score = 99.6 bits (50), Expect = 5e-22
 Identities = 104/121 (85%), Gaps = 2/121 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
           |||| ||||||||||||| |||||||||||||||||||||||||| ||| | ||  |  |
Sbjct: 132 ggaggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atca 75

                                                                       
Query: 62  cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
            | |  ||||||||  ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74  tctaatgattttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgccac 15

            
Query: 122 c 122
           |
Sbjct: 14  c 14




>42087_osa-MIR444d:mirbase
          Length = 143

 Score = 99.6 bits (50), Expect = 5e-22
 Identities = 104/121 (85%), Gaps = 2/121 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
           |||| ||||||||||||| |||||||||||||||||||||||||| ||| | ||  |  |
Sbjct: 132 ggaggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atca 75

                                                                       
Query: 62  cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
            | |  ||||||||  ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74  tctaatgattttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgccac 15

            
Query: 122 c 122
           |
Sbjct: 14  c 14




>42091_osa-MIR444f:mirbase
          Length = 154

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 1   cggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtca 49
           ||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 154 cggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaagtca 106



 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 81  ccttgaaagtaatgcagttgttgcctcatgcttggtgccacc 122
           ||||| |||||||||||||||  |||||||||||||||||||
Sbjct: 44  ccttgcaagtaatgcagttgtaacctcatgcttggtgccacc 3




>42084_osa-MIR444b:mirbase
          Length = 138

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
           |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 129 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 86



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaa 45
          |||||||| | ||||||||||||| |||||||||||
Sbjct: 18 caagcttgtggcagcaactgcacatcttgcaagaaa 53




>42083_osa-MIR444b:mirbase
          Length = 138

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
           |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 129 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 86



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaa 45
          |||||||| | ||||||||||||| |||||||||||
Sbjct: 18 caagcttgtggcagcaactgcacatcttgcaagaaa 53




>42480_ssp-MIR444c:mirbase
          Length = 108

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 7   cagcaagcttgagacagcaactgcacaacttgcaagaaa 45
           |||||||||||||||| ||||||||||||||||||||||
Sbjct: 106 cagcaagcttgagacaacaactgcacaacttgcaagaaa 68



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaa 45
          |||||| ||| ||||||||||| | |||||||||||
Sbjct: 6  caagctagaggcagcaactgcatatcttgcaagaaa 41




>42479_ssp-MIR444b:mirbase
          Length = 106

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 89/106 (83%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  caagcttgagacagcaactgcacaacttgcaagaaagtcacgattatga-agacccatag 68
           |||||||||| || ||||||||||||||||||||||| ||| | |||||     | || |
Sbjct: 106 caagcttgaggcaacaactgcacaacttgcaagaaagccacaagtatgatcctgcaattg 47

                                                         
Query: 69  attttgtaacttccttgaaagtaatgcagttgttgcctcatgcttg 114
           ||||||| |||| |||| |||||||||||||  |||||||||||||
Sbjct: 46  attttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 1



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                   
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaagtcac 50
          ||||| |||| ||| |||||||  |||||||||||||||||
Sbjct: 1  caagcatgaggcaggaactgcattacttgcaagaaagtcac 41




>42649_tae-MIR444b:mirbase
          Length = 162

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                        
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaag 46
           |||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 153 ggaggcagcaagcttgaggcagcaactgcacgacttgcaagaaag 109



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 87  aagtaatgcagttgttgcctcatgcttggtgcc 119
           |||||||||||||||||||||||||| ||||||
Sbjct: 47  aagtaatgcagttgttgcctcatgctcggtgcc 15




>42478_ssp-MIR444a:mirbase
          Length = 105

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 10  caagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccataga 69
           |||||||||| || ||||||||||||||||||||||  ||| | ||||     | || ||
Sbjct: 105 caagcttgaggcaacaactgcacaacttgcaagaaaaccacaagtatgtcctgcaattga 46

                                                        
Query: 70  ttttgtaacttccttgaaagtaatgcagttgttgcctcatgcttg 114
           |||||| |||| |||| |||||||||||||  |||||||||||||
Sbjct: 45  ttttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 1



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                   
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaagtcac 50
          ||||| |||| ||| |||||||  |||||||||||||||||
Sbjct: 1  caagcatgaggcaggaactgcattacttgcaagaaagtcac 41




>42086_osa-MIR444c:mirbase
          Length = 138

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
           |||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 127 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaaa 84



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 9  gcaagcttgagacagcaactgcacaacttgcaagaaa 45
          ||||||| ||||||||||||||| | |||||||||||
Sbjct: 21 gcaagctagagacagcaactgcatatcttgcaagaaa 57




>42085_osa-MIR444c:mirbase
          Length = 138

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
           |||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 127 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaaa 84



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 9  gcaagcttgagacagcaactgcacaacttgcaagaaa 45
          ||||||| ||||||||||||||| | |||||||||||
Sbjct: 21 gcaagctagagacagcaactgcatatcttgcaagaaa 57




>41893_hvu-MIR444a:mirbase
          Length = 114

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 7   cagcaagcttgagacagcaactgcacaacttgcaagaaag 46
           ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 111 cagcaagcttgaggcagcaactgcacgacttgcaagaaag 72




>42082_osa-MIR444a:mirbase
          Length = 131

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaa 44
           |||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 123 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaa 81




>42081_osa-MIR444a:mirbase
          Length = 131

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaa 44
           |||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 123 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaa 81




>42648_tae-MIR444:mirbase
          Length = 426

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 87  aagtaatgcagttgttgcctcatgcttggtgcc 119
           |||||||||||||||||||||||||| ||||||
Sbjct: 54  aagtaatgcagttgttgcctcatgctcggtgcc 22



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 2   ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaag 46
           |||| ||||||||||||| |||||||||||  |||||||||||||
Sbjct: 177 ggaggcagcaagcttgaggcagcaactgcatgacttgcaagaaag 133




>41805_bdi-MIR444:mirbase
          Length = 110

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 7   cagcaagcttgagacagcaactgcacaactt 37
           ||||||||||||| ||||||||||| |||||
Sbjct: 109 cagcaagcttgaggcagcaactgcataactt 79




>42090_osa-MIR444e:mirbase
          Length = 140

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 11  aagcttgagacagcaactgcacaacttgc 39
           ||||||||| ||||||||||| |||||||
Sbjct: 119 aagcttgaggcagcaactgcataacttgc 91