miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41890_hvu-MIR171:mirbase
Length = 173
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 gatgctgaaacggtcactatgatgttggctcgactcactcagaccacgccggagggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 gatgctgaaacggtcactatgatgttggctcgactcactcagaccacgccggagggagcc 94
Query: 61 atctgcggcggcggttctgattgagccgtgccaatatcttagtgctctttcatgc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 atctgcggcggcggttctgattgagccgtgccaatatcttagtgctctttcatgc 149
>42640_tae-MIR171a:mirbase
Length = 130
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 12 ggtcactatgatgttggctcgactcactcagaccacgcc 50
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ggtcactatgatgttggctcgactcactcagaccacgcc 45
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctctttcatgca 116
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatctcagtgctctttcatgca 127
>42764_zma-MIR171d:mirbase
Length = 121
Score = 69.9 bits (35), Expect = 4e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 69 cggcggttctgattgagccgtgccaatatcttagtgctctttcatgc 115
||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 73 cggcgtttctgattgagccgtgccaatatctcagtactctttcatgc 119
>42765_zma-MIR171e:mirbase
Length = 126
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 75 ttctgattgagccgtgccaatatcttagtgctctttcatgca 116
||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 84 ttctgattgagccgtgccaatatcttagtactcttccatgca 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 ctatgatgttggctcgactcactcagac 44
|||||||||||||||| |||||||||||
Sbjct: 17 ctatgatgttggctcggctcactcagac 44
>41985_osa-MIR171e:mirbase
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 75 ttctgattgagccgtgccaatatcttagtgctct 108
||||||||||||||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatatcttagtgctct 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 ctatgatgttggctcgactcactcagac 44
|||||||||||||||| |||||||||||
Sbjct: 7 ctatgatgttggctcggctcactcagac 34
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctc 107
||||||||||||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatcttagtgctc 130
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctctttcat 113
||||||||||||||||||||||||||| |||||||||
Sbjct: 93 tctgattgagccgtgccaatatcttagaactctttcat 130
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 70 ggcggttctgattgagccgtgccaatatctt 100
|||| ||||||||||||||||||||||||||
Sbjct: 60 ggcgtttctgattgagccgtgccaatatctt 90
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 ctatgatgttggctcgactcactcagaccac 47
|||||||||||||||| ||||||||||||||
Sbjct: 16 ctatgatgttggctcggctcactcagaccac 46
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 75 ttctgattgagccgtgccaatatcttagtgctctt 109
||||||||||||||||||||||||| ||| |||||
Sbjct: 111 ttctgattgagccgtgccaatatctcagtactctt 145
>40362_rco-MIR171d:mirbase
Length = 124
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagt 103
||||||||||||||||||||||||||
Sbjct: 99 tgattgagccgtgccaatatcttagt 124
>41984_osa-MIR171d:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 ttctgattgagccgtgccaatatct 99
|||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatct 126
>40322_bra-MIR171e:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctct 108
||||||||||||| |||||||||| ||||||||
Sbjct: 82 tctgattgagccgcgccaatatctcagtgctct 114
>40290_bna-MIR171f:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctct 108
||||||||||||| |||||||||| ||||||||
Sbjct: 82 tctgattgagccgcgccaatatctcagtgctct 114
>41120_tcc-MIR171e:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagtgc 105
||||||||||||||||||||| ||||||
Sbjct: 121 tgattgagccgtgccaatatcctagtgc 148
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 13 gtcactatgatgttggctcgactcactcagac 44
||||||| |||||||||||| ||||||||||
Sbjct: 13 gtcactacgatgttggctcggttcactcagac 44
>42770_zma-MIR171j:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatc 113
>41986_osa-MIR171f:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>41874_far-MIR171:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 112 tctgattgagccgtgccaatatc 134
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatctt 100
|||||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatatctt 106
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatatc 75
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatctt 100
|||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctt 102
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 73 tctgattgagccgtgccaatatc 95
>40363_rco-MIR171e:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 57 tctgattgagccgtgccaatatc 79
>40361_rco-MIR171c:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 60 tctgattgagccgtgccaatatc 82
>41538_sly-MIR171a:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatct 99
||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatct 108
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatct 99
||||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatct 121
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatct 99
||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatct 101
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatct 99
||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatct 101
>40364_rco-MIR171f:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatct 99
||||||||||||||||||||||
Sbjct: 86 tgattgagccgtgccaatatct 107
>42769_zma-MIR171i:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>42766_zma-MIR171f:mirbase
Length = 155
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>42762_zma-MIR171b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatc 142
>41983_osa-MIR171c:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>41982_osa-MIR171b:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatc 84
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>41216_crt-MIR171:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 161 tgattgagccgtgccaatatc 181
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatatc 1
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 77 tgattgagccgtgccaatatc 97
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 77 tgattgagccgtgccaatatc 97
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>40457_gma-MIR171c:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>40360_rco-MIR171b:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatc 83
>40359_rco-MIR171a:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatc 84
>40318_bra-MIR171a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>40305_bol-MIR171a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>40289_bna-MIR171e:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>40288_bna-MIR171d:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>40062_ath-MIR171c:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>40060_ath-MIR171a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctct 108
||||||||||||| |||||||||| ||| ||||
Sbjct: 86 tctgattgagccgcgccaatatctcagtactct 118
>40059_ath-MIR170:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctct 108
||||||||||||||| |||||||| ||| ||||
Sbjct: 57 tctgattgagccgtgtcaatatctcagtcctct 89
>39851_aly-MIR171c:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>39849_aly-MIR171a:mirbase
Length = 198
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctct 108
||||||||||||| |||||||||| ||| ||||
Sbjct: 128 tctgattgagccgcgccaatatctcagtactct 160
>39848_aly-MIR170:mirbase
Length = 212
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 76 tctgattgagccgtgccaatatcttagtgctct 108
||||||||||||||| |||||||| ||| ||||
Sbjct: 115 tctgattgagccgtgtcaatatctcagtcctct 147
