miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41891_hvu-MIR397:mirbase
Length = 113
Score = 224 bits (113), Expect = 1e-59
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 12 cgcagaggtgccgttgagtgcagcgttgatgaaccgtccggccatggcccgtccgcctcc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcagaggtgccgttgagtgcagcgttgatgaaccgtccggccatggcccgtccgcctcc 60
Query: 72 accgaggccggagcggttcaccggcgctgcacgcaatgacgcctctgctttct 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accgaggccggagcggttcaccggcgctgcacgcaatgacgcctctgctttct 113
>42038_osa-MIR397b:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaacc 46
||||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaacc 35
>41798_bdi-MIR397b:mirbase
Length = 292
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 cggttcaccggcgctgcacgcaatgacgcc 114
||||||||||||||||||| || |||||||
Sbjct: 87 cggttcaccggcgctgcacacagtgacgcc 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 cggttcaccggcgctgcacgcaatgacgcc 114
||||||||||||||||||| || |||||||
Sbjct: 233 cggttcaccggcgctgcacacagtgacgcc 262
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaac 45
|||||||||||||||||||||
Sbjct: 35 ttgagtgcagcgttgatgaac 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaac 45
|||||||||||||||||||||
Sbjct: 181 ttgagtgcagcgttgatgaac 201
>41797_bdi-MIR397a:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 cggttcaccggcgctgcacgcaatgacgcc 114
||||||||||||||||||| || |||||||
Sbjct: 73 cggttcaccggcgctgcacacagtgacgcc 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaac 45
|||||||||||||||||||||
Sbjct: 21 ttgagtgcagcgttgatgaac 41
>42037_osa-MIR397a:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaac 45
|||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaac 34
>41664_vvi-MIR397a:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaa 44
||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaa 33
>41443_ptc-MIR397b:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaa 44
||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaa 33
>41442_ptc-MIR397a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaa 44
||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaa 33
>41244_csi-MIR397:mirbase
Length = 156
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaa 44
||||||||||||||||||||
Sbjct: 21 ttgagtgcagcgttgatgaa 40
>41143_tcc-MIR397:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaa 44
||||||||||||||||||||
Sbjct: 24 ttgagtgcagcgttgatgaa 43
>40380_rco-MIR397:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttgagtgcagcgttgatgaa 44
||||||||||||||||||||
Sbjct: 9 ttgagtgcagcgttgatgaa 28
