miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40403_ahy-MIR398:mirbase
Length = 153
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 4 tatctcagaggagtgaacctgagaacacaaagtaaattgtttcggagtttggaatgccat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatctcagaggagtgaacctgagaacacaaagtaaattgtttcggagtttggaatgccat 60
Query: 64 aatcacatgcataatgcatttatgcttatgcttgtatatggtacatattttcgaatttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatcacatgcataatgcatttatgcttatgcttgtatatggtacatattttcgaatttta 120
Query: 124 atttaccttgtgttctcaggtcacccctttgag 156
|||||||||||||||||||||||||||||||||
Sbjct: 121 atttaccttgtgttctcaggtcacccctttgag 153
>40479_gma-MIR398b:mirbase
Length = 135
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 123 aatttaccttgtgttctcaggtcacccctttgagccaac 161
||||||| |||||||||||||||||||||||||||||||
Sbjct: 87 aatttactttgtgttctcaggtcacccctttgagccaac 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2 tttatctcagaggagtgaacctgagaacacaa 33
||||||||||||||||| | ||||||||||||
Sbjct: 12 tttatctcagaggagtggatctgagaacacaa 43
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 acctgagaacacaaagtaaatt 41
||||||||||||||||||||||
Sbjct: 108 acctgagaacacaaagtaaatt 87
>40478_gma-MIR398a:mirbase
Length = 116
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 123 aatttaccttgtgttctcaggtcacccctttgagccaac 161
||||||| |||||||||||||||||||||||||||||||
Sbjct: 68 aatttactttgtgttctcaggtcacccctttgagccaac 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 acctgagaacacaaagtaaatt 41
||||||||||||||||||||||
Sbjct: 89 acctgagaacacaaagtaaatt 68
>41245_csi-MIR398:mirbase
Length = 225
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 128 accttgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||||||
Sbjct: 128 accttgtgttctcaggtcacccctttg 154
>40728_mtr-MIR398a:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttgag 156
||||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttgag 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 6 tctcagaggagtgaacctgagaacacaa 33
|||||||||||||| ||||||||||||
Sbjct: 1 tctcagaggagtgacactgagaacacaa 28
>41078_gra-MIR398:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 130 cttgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||||
Sbjct: 64 cttgtgttctcaggtcacccctttg 88
>41059_ghr-MIR398:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 130 cttgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||||
Sbjct: 64 cttgtgttctcaggtcacccctttg 88
>40308_bol-MIR398a:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttga 155
|||||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctttga 94
>40089_ath-MIR398a:mirbase
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttga 155
|||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttga 98
>39881_aly-MIR398a:mirbase
Length = 182
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttga 155
|||||||||||||||||||||||||
Sbjct: 121 ttgtgttctcaggtcacccctttga 145
>41800_bdi-MIR398b:mirbase
Length = 163
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttg 154
||||||||||||||||||||||||
Sbjct: 100 ttgtgttctcaggtcacccctttg 123
>41665_vvi-MIR398a:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttg 154
||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttg 95
>41190_aqc-MIR398a:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctttg 154
||||||||||||||||||||||||
Sbjct: 65 ttgtgttctcaggtcacccctttg 88
>42039_osa-MIR398a:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttg 107
>41445_ptc-MIR398a:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttg 102
>40381_rco-MIR398a:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccctttg 154
|||||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccctttg 88
>41145_tcc-MIR398b:mirbase
Length = 165
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 131 ttgtgttctcaggtcacccctt 152
||||||||||||||||||||||
Sbjct: 124 ttgtgttctcaggtcacccctt 145
>40091_ath-MIR398c:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccct 151
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>40090_ath-MIR398b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccct 151
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
>39882_aly-MIR398b:mirbase
Length = 142
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 132 tgtgttctcaggtcacccct 151
||||||||||||||||||||
Sbjct: 91 tgtgttctcaggtcacccct 110
