miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41424_ptc-MIR394b:mirbase
          Length = 147

 Score =  155 bits (78), Expect = 1e-38
 Identities = 133/151 (88%), Gaps = 4/151 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   tcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcccat 65
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcctat 60

                                                                       
Query: 66  ctgtagaaatctgtctctctcacgagctcacatggaggtgggcatactgccaactgagct 125
           || |||||||  |  | ||||      ||| ||||||||||||||||||||||| |||||
Sbjct: 61  ctttagaaattagaatatctc----tttcatatggaggtgggcatactgccaaccgagct 116

                                          
Query: 126 ctgttggtctctctttgtaaaactctcgtga 156
           ||||||||||||||||||||||| |||||||
Sbjct: 117 ctgttggtctctctttgtaaaaccctcgtga 147




>41423_ptc-MIR394b:mirbase
          Length = 147

 Score =  155 bits (78), Expect = 1e-38
 Identities = 133/151 (88%), Gaps = 4/151 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   tcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcccat 65
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcctat 60

                                                                       
Query: 66  ctgtagaaatctgtctctctcacgagctcacatggaggtgggcatactgccaactgagct 125
           || |||||||  |  | ||||      ||| ||||||||||||||||||||||| |||||
Sbjct: 61  ctttagaaattagaatatctc----tttcatatggaggtgggcatactgccaaccgagct 116

                                          
Query: 126 ctgttggtctctctttgtaaaactctcgtga 156
           ||||||||||||||||||||||| |||||||
Sbjct: 117 ctgttggtctctctttgtaaaaccctcgtga 147




>41422_ptc-MIR394a:mirbase
          Length = 147

 Score =  109 bits (55), Expect = 6e-25
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                      
Query: 98  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaactctcgtga 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 89  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147




>41421_ptc-MIR394a:mirbase
          Length = 147

 Score =  109 bits (55), Expect = 6e-25
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                      
Query: 98  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaactctcgtga 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 89  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147




>41055_ghr-MIR394a:mirbase
          Length = 167

 Score = 99.6 bits (50), Expect = 6e-22
 Identities = 59/62 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  gctttcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctc 61
          ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2  gctttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctc 61

            
Query: 62 cc 63
          ||
Sbjct: 62 cc 63



 Score = 79.8 bits (40), Expect = 6e-16
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 96  catggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaa 147
           |||||||||||||||||||||||||| ||||||||||  |||||||||||||
Sbjct: 103 catggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaa 154




>41134_tcc-MIR394a:mirbase
          Length = 120

 Score = 79.8 bits (40), Expect = 6e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 23 agggtttcttacagagtttattggcattctgtccacctcccatc 66
          |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agggcttcttacagagtttattggcattctgtccacctcccatc 44



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 96  catggaggtgggcatactgccaactgagctctgttgg 132
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 76  catggaggtgggcatactgccaactgggctctgttgg 112




>41239_csi-MIR394:mirbase
          Length = 147

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 96  catggaggtgggcatactgccaactgagctctgttgg 132
           |||||||||||||||||||||||||||||||||||||
Sbjct: 103 catggaggtgggcatactgccaactgagctctgttgg 139



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 28 ttcttacagagtttattggcattctgtccacctcc 62
          |||||||||||||||||||||||||||||||||||
Sbjct: 2  ttcttacagagtttattggcattctgtccacctcc 36




>40471_gma-MIR394a:mirbase
          Length = 157

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 6  tcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcc 62
          ||||| ||||||| ||||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 2  tcatgagggtttagcaaagtgttgctaacagagtttattggcattctgtccacctcc 58



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 97  atggaggtgggcatactgccaactgagctctgttgg 132
           |||||||||||||||||| |||||||||||||||||
Sbjct: 97  atggaggtgggcatactgtcaactgagctctgttgg 132




>41644_vvi-MIR394b:mirbase
          Length = 93

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 33 acagagtttattggcattctgtccacctcccatct 67
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  acagagtttattggcattctgtccacctcccatct 35



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 98  tggaggtgggcatactgccaactgagctctgtt 130
           ||||||||||||||||||||||  |||||||||
Sbjct: 61  tggaggtgggcatactgccaaccaagctctgtt 93




>39867_aly-MIR394a:mirbase
          Length = 220

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 4  tttcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcc 62
          ||||||| |||||| |||||| ||||||||||||  |  ||||||||||||||||||||
Sbjct: 29 tttcatgagggtttgacaaagagtttcttacagacatctttggcattctgtccacctcc 87




>40472_gma-MIR394b:mirbase
          Length = 104

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 33 acagagtttattggcattctgtccacctcc 62
          ||||||||||||||||||||||||||||||
Sbjct: 3  acagagtttattggcattctgtccacctcc 32



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 98  tggaggtgggcatactgccaactgagctctgttg 131
           ||||||||||||||||| |||||||| |||||||
Sbjct: 71  tggaggtgggcatactgtcaactgagttctgttg 104




>41776_bdi-MIR394:mirbase
          Length = 200

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 98  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaac 148
           |||||||||||||||||||||  ||||| ||| ||  || |||||||||||
Sbjct: 125 tggaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaaac 175



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72




>39868_aly-MIR394b:mirbase
          Length = 160

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 29 tcttacagagtttattggcattctgtccacctcc 62
          |||||||||| |  ||||||||||||||||||||
Sbjct: 27 tcttacagagatctttggcattctgtccacctcc 60




>42790_zma-MIR394b:mirbase
          Length = 122

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 ttggcattctgtccacctccc 63
          |||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 98  tggaggtgggcatactgccaa 118
           |||||||||||||||||||||
Sbjct: 83  tggaggtgggcatactgccaa 103




>42789_zma-MIR394a:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 98  tggaggtgggcatactgccaa 118
           |||||||||||||||||||||
Sbjct: 87  tggaggtgggcatactgccaa 107



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>42569_sbi-MIR394b:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 98  tggaggtgggcatactgccaa 118
           |||||||||||||||||||||
Sbjct: 53  tggaggtgggcatactgccaa 73



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 2  ttggcattctgtccacctcc 21




>42000_osa-MIR394:mirbase
          Length = 110

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 98  tggaggtgggcatactgccaa 118
           |||||||||||||||||||||
Sbjct: 76  tggaggtgggcatactgccaa 96



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33




>40078_ath-MIR394b:mirbase
          Length = 121

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 30 cttacagagtttattggcattctgtccacctcc 62
          ||||||||| |  ||||||||||||||||||||
Sbjct: 1  cttacagagatctttggcattctgtccacctcc 33



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  ggaggtgggcatactgccaa 118
           ||||||||||||||||||||
Sbjct: 88  ggaggtgggcatactgccaa 107




>42568_sbi-MIR394a:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>41645_vvi-MIR394c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30




>41643_vvi-MIR394a:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30




>41135_tcc-MIR394b:mirbase
          Length = 125

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>41056_ghr-MIR394b:mirbase
          Length = 165

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54




>40402_ahy-MIR394:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41




>40077_ath-MIR394a:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33