miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41215_crt-MIR168:mirbase
          Length = 201

 Score = 77.8 bits (39), Expect = 5e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 7  cggcggtctctaattcgcttggtgcaggtcgggaactga 45



 Score = 58.0 bits (29), Expect = 5e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtga 353
           ||||||||||||||||||||||||| ||||| |||||
Sbjct: 142 tcccgccttgcatcaactgaatcggagaccgaggtga 178




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 77.8 bits (39), Expect = 5e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 6  cggcggtctctaattcgcttggtgcaggtcgggaactga 44



 Score = 56.0 bits (28), Expect = 2e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtg 352
           ||||||||||||||||||||||||| ||||| ||||
Sbjct: 141 tcccgccttgcatcaactgaatcggagaccgaggtg 176




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 77.8 bits (39), Expect = 5e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 7  cggcggtctctaattcgcttggtgcaggtcgggaactga 45



 Score = 65.9 bits (33), Expect = 2e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtga 353
           ||||||||||||||||||||||||| |||||||||||
Sbjct: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162




>41348_ptc-MIR168b:mirbase
          Length = 136

 Score = 69.9 bits (35), Expect = 1e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 15 ggtctctaattcgcttggtgcaggtcgggaactga 49
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaactga 35



 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 317 tcccgccttgcatcaactgaatcgg 341
           |||||||||||||||||||||||||
Sbjct: 109 tcccgccttgcatcaactgaatcgg 133




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 67.9 bits (34), Expect = 5e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 60.0 bits (30), Expect = 1e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 317 tcccgccttgcatcaactgaatcggtgaccgcggtgaa 354
           ||||||||||||||||||||||||| | ||||||||||
Sbjct: 87  tcccgccttgcatcaactgaatcggaggccgcggtgaa 124




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 65.9 bits (33), Expect = 2e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 15 ggtctctaattcgcttggtgcaggtcgggaactgact 51
          |||||||||||||||||||||||||||||||| ||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccgact 37



 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 317 tcccgccttgcatcaactgaatcgg 341
           |||||||||||||||||||||||||
Sbjct: 101 tcccgccttgcatcaactgaatcgg 125




>41347_ptc-MIR168a:mirbase
          Length = 160

 Score = 61.9 bits (31), Expect = 3e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 15 ggtctctaattcgcttggtgcaggtcgggaactga 49
          ||||||| |||||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaactga 35



 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 317 tcccgccttgcatcaactgaatcgg 341
           |||||||||||||||||||||||||
Sbjct: 133 tcccgccttgcatcaactgaatcgg 157




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 61.9 bits (31), Expect = 3e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
          ||||||||||  |||||||||||||||||||||||||||
Sbjct: 5  cggcggtctcggattcgcttggtgcaggtcgggaactga 43




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 61.9 bits (31), Expect = 3e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
          ||||||||||  |||||||||||||||||||||||||||
Sbjct: 29 cggcggtctcggattcgcttggtgcaggtcgggaactga 67




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 60.0 bits (30), Expect = 1e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 20 ctaattcgcttggtgcaggtcgggaactga 49
          ||||||||||||||||||||||||||||||
Sbjct: 1  ctaattcgcttggtgcaggtcgggaactga 30



 Score = 48.1 bits (24), Expect = 5e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 317 tcccgccttgcatcaactgaatcg 340
           ||||||||||||||||||||||||
Sbjct: 105 tcccgccttgcatcaactgaatcg 128




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 54.0 bits (27), Expect = 8e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 11 cggcggtctctaattcgcttggtgcaggtcgggaactga 49
          |||||| |||| | |||||||||||||||||||||||||
Sbjct: 4  cggcggcctctgactcgcttggtgcaggtcgggaactga 42




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 317 tcccgccttgcatcaactgaatcgg 341
           |||||||||||||||||||||||||
Sbjct: 102 tcccgccttgcatcaactgaatcgg 126



 Score = 48.1 bits (24), Expect = 5e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 317 tcccgccttgcatcaactgaatcgg 341
           |||||||||||||||||||||||||
Sbjct: 108 tcccgccttgcatcaactgaatcgg 132



 Score = 48.1 bits (24), Expect = 5e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 22 attcgcttggtgcaggtcgggaac 45




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 317 tcccgccttgcatcaactgaatcgg 341
           |||||||||||||||| ||||||||
Sbjct: 66  tcccgccttgcatcaagtgaatcgg 90