miRNEST 2.0, an integrative microRNA resource :: BLAST
>40468_gma-MIR390a:mirbase
Length = 105
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatggatga 55
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatga 39
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttct 134
||||||||||||||||||||||| ||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>40467_gma-MIR390a:mirbase
Length = 105
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatggatga 55
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatga 39
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttct 134
||||||||||||||||||||||| ||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 13 tgggagaatctgtaaagctcaggagggatagcgccat 49
|||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgggagaatctgtaaagctcaggagggatagcgccat 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttcatgct 141
|||||||| |||||||||||||| | |||||| ||||
Sbjct: 79 gcgctatctatcctgagtttcatgggttcttcctgct 115
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatggatga 55
||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatggatga 39
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 102 atagcgctatccatcctgagtttcat 127
||||||||||||||||||||||||||
Sbjct: 84 atagcgctatccatcctgagtttcat 109
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatggatga 55
||||||||| |||||||||||||||||||||||||||||
Sbjct: 8 agaatctgttaagctcaggagggatagcgccatggatga 46
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 102 atagcgctatccatcctgagtttcatagcttcttcatgct 141
|||||||||||||||||||||||||| | |||||| ||||
Sbjct: 91 atagcgctatccatcctgagtttcatcggttcttcttgct 130
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatggatga 55
||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatggatga 43
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 102 atagcgctatccatcctgagtttcatagcttcttc 136
|||||||||||||||||||||||||| | ||||||
Sbjct: 88 atagcgctatccatcctgagtttcatcggttcttc 122
>40072_ath-MIR390a:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccatg 41
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcat 127
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>39862_aly-MIR390a:mirbase
Length = 129
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||||||||||
Sbjct: 19 agaatctgtaaagctcaggagggatagcgccatg 52
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcat 127
|||||||||||||||||||||||
Sbjct: 80 gcgctatccatcctgagtttcat 102
>40293_bna-MIR390b:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccat 49
|||||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccat 40
>41237_csi-MIR390:mirbase
Length = 154
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatgg 51
||||||||| |||||||||||||||||||||||||
Sbjct: 11 agaatctgttaagctcaggagggatagcgccatgg 45
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttcatgctctct 145
||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 98 gcgctatccatcctgagtttcatggcttcttcttactctct 138
>41640_vvi-MIR390:mirbase
Length = 140
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatg 50
||||||||| ||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatg 50
||||||||| ||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 103 tagcgctatccatcctgagtttcatagcttcttcatgctct 143
||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 86 tagcgctatccatcctgagtttcatcggttcttcttgctct 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 ctgtaaagctcaggagggatagcgccatggatga 55
|||| ||||||||||||||||||||||| |||||
Sbjct: 16 ctgttaagctcaggagggatagcgccattgatga 49
>40372_rco-MIR390b:mirbase
Length = 122
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgccatggatgaatat 59
|||||||||||||||||||||||||||| ||||
Sbjct: 6 aagctcaggagggatagcgccatggatggatat 38
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 102 atagcgctatccatcctgagtttcat 127
||||||||||||||||||||||||||
Sbjct: 93 atagcgctatccatcctgagtttcat 118
>40294_bna-MIR390c:mirbase
Length = 128
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 22 ctgtaaagctcaggagggatagcgccatg 50
|||||||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttcatgct 141
||||||||||||||||||| ||| |||||||| ||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttcttgct 121
>40292_bna-MIR390a:mirbase
Length = 144
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 22 ctgtaaagctcaggagggatagcgccatg 50
|||||||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttcatgct 141
||||||||||||||||||| || |||||||| ||||
Sbjct: 95 gcgctatccatcctgagttctatggcttcttcttgct 131
>39863_aly-MIR390b:mirbase
Length = 127
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttcatgct 141
||||||||||||||||||| |||||||||||| ||||
Sbjct: 91 gcgctatccatcctgagttccatagcttcttcttgct 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 25 taaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||
Sbjct: 17 taaagctcaggagggatagcgccatg 42
>40469_gma-MIR390b:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagc 44
||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>40073_ath-MIR390b:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttc 136
||||||||||||||||||| ||||||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttc 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 25 taaagctcaggagggatagcgccatgg 51
|||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatgg 39
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgcc 47
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagttt 124
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 atctgtaaagctcaggagggatagcgccatg 50
|||||| ||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgcc 47
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagctt 132
||||||||||||||||||||||| ||||
Sbjct: 79 gcgctatccatcctgagtttcattgctt 106
>40705_mtr-MIR390:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 ctgtaaagctcaggagggatagcgccat 49
|||| |||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcat 127
|||||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagtttcat 98
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgccat 49
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>40371_rco-MIR390a:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 ctgtaaagctcaggagggatagcgcc 47
|||| |||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttca 126
||||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttca 103
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 28 agctcaggagggatagcgcc 47
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
