miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41078_gra-MIR398:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 cttgtgttctcaggtcaccccttttgggt 113
|||||||||||||||||||||||| ||||
Sbjct: 64 cttgtgttctcaggtcacccctttggggt 92
>41059_ghr-MIR398:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 cttgtgttctcaggtcaccccttttgggt 113
|||||||||||||||||||||||| ||||
Sbjct: 64 cttgtgttctcaggtcacccctttggggt 92
>41245_csi-MIR398:mirbase
Length = 225
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 cttgtgttctcaggtcaccccttt 108
||||||||||||||||||||||||
Sbjct: 130 cttgtgttctcaggtcaccccttt 153
>41190_aqc-MIR398a:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 tgcacttgtgttctcaggtcaccccttt 108
|||| |||||||||||||||||||||||
Sbjct: 60 tgcatttgtgttctcaggtcaccccttt 87
>40403_ahy-MIR398:mirbase
Length = 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 cttgtgttctcaggtcaccccttt 108
||||||||||||||||||||||||
Sbjct: 127 cttgtgttctcaggtcaccccttt 150
>40381_rco-MIR398a:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 tgcacttgtgttctcaggtcaccccttt 108
||||| ||||||||||||||||||||||
Sbjct: 60 tgcacctgtgttctcaggtcaccccttt 87
>41800_bdi-MIR398b:mirbase
Length = 163
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 100 ttgtgttctcaggtcaccccttt 122
>41665_vvi-MIR398a:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcaccccttt 94
>40728_mtr-MIR398a:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcaccccttt 94
>40479_gma-MIR398b:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 95 ttgtgttctcaggtcaccccttt 117
>40478_gma-MIR398a:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 76 ttgtgttctcaggtcaccccttt 98
>40308_bol-MIR398a:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcaccccttt 92
>40089_ath-MIR398a:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcaccccttt 96
>39881_aly-MIR398a:mirbase
Length = 182
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcaccccttt 108
|||||||||||||||||||||||
Sbjct: 121 ttgtgttctcaggtcaccccttt 143
>42039_osa-MIR398a:mirbase
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcaccccttt 108
||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcaccccttt 106
>41445_ptc-MIR398a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcaccccttt 108
||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcaccccttt 101
>41145_tcc-MIR398b:mirbase
Length = 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 ttgtgttctcaggtcacccctt 107
||||||||||||||||||||||
Sbjct: 124 ttgtgttctcaggtcacccctt 145
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcaccccttttgggtc 114
|||||||||||||| ||||| |||||||
Sbjct: 87 tgtgttctcaggtcgcccctgttgggtc 114
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcaccccttttgggtc 114
|||||||||||||| ||||| |||||||
Sbjct: 96 tgtgttctcaggtcgcccctgttgggtc 123
>40091_ath-MIR398c:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcacccct 106
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>40090_ath-MIR398b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcacccct 106
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
>39882_aly-MIR398b:mirbase
Length = 142
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tgtgttctcaggtcacccct 106
||||||||||||||||||||
Sbjct: 91 tgtgttctcaggtcacccct 110
