miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 7e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 11 caaagggttccttacagagttctttggcattctgtccacctcc 53
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 15 caaagggtttcttacagagttttttggcattctgtccacctcc 57
Score = 60.0 bits (30), Expect = 7e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaacagatttctgttggtttctctttgcgaaaccct 201
|||||||||||||||||||||| || ||||||||| |||||||| |||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccct 142
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 7e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 11 caaagggttccttacagagttctttggcattctgtccacctcc 53
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 15 caaagggtttcttacagagttttttggcattctgtccacctcc 57
Score = 60.0 bits (30), Expect = 7e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaacagatttctgttggtttctctttgcgaaaccct 201
|||||||||||||||||||||| || ||||||||| |||||||| |||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccct 142
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 63.9 bits (32), Expect = 4e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 11 caaagggttccttacagagttctttggcattctgtccacctcct 54
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 15 caaagggtttcttacagagtttattggcattctgtccacctcct 58
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 146 tatggaggtgggcatactgccaacagatttctgttggtttctctttgcgaaaccct 201
|||||||||||||||||||||||| || ||||||||| |||||||| |||||||
Sbjct: 87 tatggaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaaccct 142
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 63.9 bits (32), Expect = 4e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 11 caaagggttccttacagagttctttggcattctgtccacctcct 54
||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 15 caaagggtttcttacagagtttattggcattctgtccacctcct 58
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 146 tatggaggtgggcatactgccaacagatttctgttggtttctctttgcgaaaccct 201
|||||||||||||||||||||||| || ||||||||| |||||||| |||||||
Sbjct: 87 tatggaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaaccct 142
>40078_ath-MIR394b:mirbase
Length = 121
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 21 cttacagagttctttggcattctgtccacctcctc 55
||||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcctc 35
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 ggaggtgggcatactgccaa 168
||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaa 107
>39868_aly-MIR394b:mirbase
Length = 160
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 21 cttacagagttctttggcattctgtccacctcctc 55
||||||||| |||||||||||||||||||||||||
Sbjct: 28 cttacagagatctttggcattctgtccacctcctc 62
>39867_aly-MIR394a:mirbase
Length = 220
Score = 60.0 bits (30), Expect = 7e-10
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 10 acaaagggttccttacagagttctttggcattctgtccacctcctc 55
|||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct: 44 acaaagagtttcttacagacatctttggcattctgtccacctcctc 89
>42000_osa-MIR394:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 26 agagttctttggcattctgtccacctcct 54
|||||||||||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcct 34
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaa 168
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
>41239_csi-MIR394:mirbase
Length = 147
Score = 56.0 bits (28), Expect = 1e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 atggaggtgggcatactgccaacagatttctgttggtttctctt 190
||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 104 atggaggtgggcatactgccaactgagctctgttggcttctctt 147
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 21 cttacagagttctttggcattctgtccacctcc 53
||||||||||| ||||||||||||||||||||
Sbjct: 4 cttacagagtttattggcattctgtccacctcc 36
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 11 caaagggttccttacagagttctttggcattctgtccacctcc 53
||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 20 caaagggcttcttacagagtttattggcattctgtccacctcc 62
Score = 52.0 bits (26), Expect = 2e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 147 atggaggtgggcatactgccaacagatttctgttggtttctctttg 192
||||||||||||||||||||||| | |||||||| |||||||||
Sbjct: 104 atggaggtgggcatactgccaactgtgctctgttggcttctctttg 149
>42789_zma-MIR394a:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 agagttctttggcattctgtccacctcctc 55
||||||| ||||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcctc 42
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaa 168
|||||||||||||||||||||
Sbjct: 87 tggaggtgggcatactgccaa 107
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 26 agagttctttggcattctgtccacctcct 54
||||||| |||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcct 41
>41776_bdi-MIR394:mirbase
Length = 200
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 26 agagttctttggcattctgtccacctcct 54
|||| ||||||||||||||||||||||||
Sbjct: 45 agagctctttggcattctgtccacctcct 73
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaa 168
|||||||||||||||||||||
Sbjct: 125 tggaggtgggcatactgccaa 145
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 21 cttacagagttctttggcattctgtccacctcc 53
||||||||||| ||||||||||||||||||||
Sbjct: 8 cttacagagtttattggcattctgtccacctcc 40
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 147 atggaggtgggcatactgccaacagatttctgttggtttctctt 190
||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 77 atggaggtgggcatactgccaactgggctctgttggcttctctt 120
>42790_zma-MIR394b:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 agagttctttggcattctgtccacctcc 53
||||||| ||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcc 40
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaa 168
|||||||||||||||||||||
Sbjct: 83 tggaggtgggcatactgccaa 103
>40077_ath-MIR394a:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tctttggcattctgtccacctcct 54
||||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcct 34
>40471_gma-MIR394a:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 11 caaagggttccttacagagttctttggcattctgtccacctcc 53
||||| ||| || |||||||| ||||||||||||||||||||
Sbjct: 16 caaagtgttgctaacagagtttattggcattctgtccacctcc 58
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 146 tatggaggtgggcatactgccaacagatttctgttgg 182
||||||||||||||||||| |||| || ||||||||
Sbjct: 96 tatggaggtgggcatactgtcaactgagctctgttgg 132
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 24 acagagttctttggcattctgtccacctcc 53
|||||||| ||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcc 30
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaac 169
||||||||||||||||||||||
Sbjct: 61 tggaggtgggcatactgccaac 82
>40472_gma-MIR394b:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 24 acagagttctttggcattctgtccacctcc 53
|||||||| ||||||||||||||||||||
Sbjct: 3 acagagtttattggcattctgtccacctcc 32
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaacagatttctgttg 181
||||||||||||||||| |||| || ||||||||
Sbjct: 71 tggaggtgggcatactgtcaactgagttctgttg 104
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 ttggcattctgtccacctcct 54
|||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcct 22
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 148 tggaggtgggcatactgccaa 168
|||||||||||||||||||||
Sbjct: 53 tggaggtgggcatactgccaa 73
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 tttggcattctgtccacctcc 53
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 tttggcattctgtccacctcc 53
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 tttggcattctgtccacctcc 53
|||||||||||||||||||||
Sbjct: 20 tttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 tttggcattctgtccacctcc 53
|||||||||||||||||||||
Sbjct: 34 tttggcattctgtccacctcc 54
>40402_ahy-MIR394:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 tttggcattctgtccacctcc 53
|||||||||||||||||||||
Sbjct: 21 tttggcattctgtccacctcc 41
