miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39382_pab-MIR397:mirbase
          Length = 134

 Score =  266 bits (134), Expect = 4e-72
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   agccgtggcaaccacatcattgagtgcagcgttgacgatagaaattccaccaatagattt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agccgtggcaaccacatcattgagtgcagcgttgacgatagaaattccaccaatagattt 60

                                                                       
Query: 67  gataatatctatctatttgtggaatgccattgatattgttaaccctgcactcaatagtat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gataatatctatctatttgtggaatgccattgatattgttaaccctgcactcaatagtat 120

                         
Query: 127 gtttgccaatggct 140
           ||||||||||||||
Sbjct: 121 gtttgccaatggct 134




>41143_tcc-MIR397:mirbase
          Length = 123

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 cacatcattgagtgcagcgttga 41
          |||||||||||||||||||||||
Sbjct: 17 cacatcattgagtgcagcgttga 39




>41664_vvi-MIR397a:mirbase
          Length = 118

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 8  acatcattgagtgcagcgttga 29




>41244_csi-MIR397:mirbase
          Length = 156

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 15 acatcattgagtgcagcgttga 36




>40380_rco-MIR397:mirbase
          Length = 157

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 3  acatcattgagtgcagcgttga 24




>40298_bna-MIR397b:mirbase
          Length = 96

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 3  acatcattgagtgcagcgttga 24




>40297_bna-MIR397a:mirbase
          Length = 96

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 3  acatcattgagtgcagcgttga 24




>40087_ath-MIR397a:mirbase
          Length = 107

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 8  acatcattgagtgcagcgttga 29




>39880_aly-MIR397b:mirbase
          Length = 131

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 16 acatcattgagtgcagcgttga 37




>39879_aly-MIR397a:mirbase
          Length = 126

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 acatcattgagtgcagcgttga 41
          ||||||||||||||||||||||
Sbjct: 17 acatcattgagtgcagcgttga 38




>42037_osa-MIR397a:mirbase
          Length = 114

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 catcattgagtgcagcgttga 41
          |||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttga 29




>41798_bdi-MIR397b:mirbase
          Length = 292

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 catcattgagtgcagcgttga 41
          |||||||||||||||||||||
Sbjct: 30 catcattgagtgcagcgttga 50



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 21  catcattgagtgcagcgttga 41
           |||||||||||||||||||||
Sbjct: 176 catcattgagtgcagcgttga 196




>41797_bdi-MIR397a:mirbase
          Length = 124

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 catcattgagtgcagcgttga 41
          |||||||||||||||||||||
Sbjct: 16 catcattgagtgcagcgttga 36




>41442_ptc-MIR397a:mirbase
          Length = 120

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 catcattgagtgcagcgttga 41
          |||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttga 29