miRNEST 2.0, an integrative microRNA resource :: BLAST
>39381_pab-MIR396c:mirbase
Length = 143
Score = 139 bits (70), Expect = 5e-34
Identities = 94/102 (92%)
Strand = Plus / Minus
Query: 12 ttcccacggctttcttgagcttcttatgcggatctgttggcggtgagattgaccgccaac 71
||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||
Sbjct: 118 ttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcgatctgtcgccaac 59
Query: 72 actgccgatcgggaagttcaagaaagccgtggaaaaatatga 113
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 58 actcccgatcgggaagttcaagaaagccgtggaaaaatatga 17
>39878_aly-MIR396b:mirbase
Length = 188
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatatgac 114
|||||||||||||| |||||||||||||||
Sbjct: 52 aagttcaagaaagctgtggaaaaatatgac 23
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tttcccacggctttcttgagcttctt 36
|||||||| |||||||||||||||||
Sbjct: 155 tttcccacagctttcttgagcttctt 130
>39380_pab-MIR396b:mirbase
Length = 116
Score = 52.0 bits (26), Expect = 9e-08
Identities = 90/111 (81%), Gaps = 4/111 (3%)
Strand = Plus / Minus
Query: 7 ataatttcccacggctttcttgagcttcttatgcggatctgttggcggtgagattgaccg 66
||||||||||||||||||||||| ||| | | |||||||||| || || ||| | |||
Sbjct: 111 ataatttcccacggctttcttgatcttgtcacccggatctgttatcgatgcgatcggccg 52
Query: 67 ccaacactgccgatcgggaagt----tcaagaaagccgtggaaaaatatga 113
|||||| | ||||| ||||| ||||||||||||||||||| |||||
Sbjct: 51 ccaacagacctgatcgtgaagtaagttcaagaaagccgtggaaaactatga 1
>41243_csi-MIR396c:mirbase
Length = 178
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaaatatgacag 116
||||||||||||||| ||||||||| |||||||
Sbjct: 34 gaagttcaagaaagctgtggaaaaacatgacag 2
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 84 gaagttcaagaaagccgtggaaaaatatgacag 116
|||||||||||||||||||||||| |||||||
Sbjct: 103 gaagttcaagaaagccgtggaaaagcatgacag 135
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tttcccacggctttcttgagcttc 34
||||||||||||||||||||||||
Sbjct: 162 tttcccacggctttcttgagcttc 139
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaa 107
|||||||||||||||||||||||
Sbjct: 41 aagttcaagaaagccgtggaaaa 19
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaa 107
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaa 9
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tttcccacggctttcttgagctt 33
|||||||||||||||||||||||
Sbjct: 162 tttcccacggctttcttgagctt 140
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 tcaagaaagccgtggaaaaatatga 113
||||||||||||||| |||||||||
Sbjct: 144 tcaagaaagccgtgggaaaatatga 168
>39426_pta-MIR396:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatatgaca 115
|||||||||||||| |||||||| |||||||
Sbjct: 37 aagttcaagaaagctgtggaaaagtatgaca 7
>41440_ptc-MIR396f:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 agttcaagaaagccgtggaaaa 107
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 tcccacggctttcttgagcttc 34
||||||||||||||||||||||
Sbjct: 146 tcccacggctttcttgagcttc 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 83 ggaagttcaagaaagccgtggaaaa 107
|||||||||||||||| ||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaa 9
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 83 ggaagttcaagaaagccgtggaaaaa 108
|||||||||||||||| |||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaaa 8
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gaagttcaagaaagccgtggaa 105
||||||||||||||||||||||
Sbjct: 73 gaagttcaagaaagccgtggaa 94
>40086_ath-MIR396b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatatgac 114
|||||||||||||| |||||||| ||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgac 2
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 11 tttcccacggctttcttgagcttc 34
|||||||| |||||||||||||||
Sbjct: 127 tttcccacagctttcttgagcttc 104
>42811_zma-MIR396e:mirbase
Length = 166
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 12 ttcccacggctttcttgagcttctt 36
|||||||||||||||||| ||||||
Sbjct: 164 ttcccacggctttcttgaccttctt 140
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 82 gggaagttcaagaaagccgtggaaa 106
||||||||||||||||| |||||||
Sbjct: 55 gggaagttcaagaaagctgtggaaa 31
>41242_csi-MIR396b:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 86 agttcaagaaagccgtggaaaaata 110
||||||||||||| |||||||||||
Sbjct: 39 agttcaagaaagctgtggaaaaata 15
>41212_ccl-MIR396:mirbase
Length = 277
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 83 ggaagttcaagaaagccgtggaaaa 107
|||||||||||||||| ||||||||
Sbjct: 165 ggaagttcaagaaagctgtggaaaa 141
>39741_smo-MIR396:mirbase
Length = 168
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 gttcaagaaagccgtggaaaa 107
|||||||||||||||||||||
Sbjct: 29 gttcaagaaagccgtggaaaa 9
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 35 gaagttcaagaaagctgtggaaaa 12
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaa 9
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 11 tttcccacggctttcttgagcttc 34
|||||||| |||||||||||||||
Sbjct: 132 tttcccacagctttcttgagcttc 109
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 27 gaagttcaagaaagctgtggaaaa 4
>40476_gma-MIR396d:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaa 9
>40475_gma-MIR396c:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 42 gaagttcaagaaagctgtggaaaa 19
>40474_gma-MIR396b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 42 gaagttcaagaaagctgtggaaaa 19
>40379_rco-MIR396:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaa 107
||||||||||||||| ||||||||
Sbjct: 27 gaagttcaagaaagctgtggaaaa 4
