miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39381_pab-MIR396c:mirbase
          Length = 143

 Score =  232 bits (117), Expect = 5e-62
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttaatattcttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cctttaatattcttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcga 71

                                                                    
Query: 61  tctgtcgccaacactcccgatcgggaagttcaagaaagccgtggaaaaatatgagag 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tctgtcgccaacactcccgatcgggaagttcaagaaagccgtggaaaaatatgagag 14




>39380_pab-MIR396b:mirbase
          Length = 116

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 87/106 (82%), Gaps = 4/106 (3%)
 Strand = Plus / Minus

                                                                       
Query: 13  ttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcgatctgtcgccaac 72
           |||||||||||||||||| |||   |  ||||||||||| || ||||||| | |||||||
Sbjct: 106 ttcccacggctttcttgatcttgtcacccggatctgttatcgatgcgatcggccgccaac 47

                                                         
Query: 73  actcccgatcg----ggaagttcaagaaagccgtggaaaaatatga 114
           |  || |||||    | ||||||||||||||||||||||| |||||
Sbjct: 46  agacctgatcgtgaagtaagttcaagaaagccgtggaaaactatga 1




>39878_aly-MIR396b:mirbase
          Length = 188

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 86  aagttcaagaaagccgtggaaaaatatga 114
           |||||||||||||| ||||||||||||||
Sbjct: 52  aagttcaagaaagctgtggaaaaatatga 24




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||||||||||||
Sbjct: 103 gaagttcaagaaagccgtggaaaa 126




>41441_ptc-MIR396g:mirbase
          Length = 168

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 86  aagttcaagaaagccgtggaaaa 108
           |||||||||||||||||||||||
Sbjct: 31  aagttcaagaaagccgtggaaaa 9



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 13  ttcccacggctttcttgagctt 34
           ||||||||||||||||||||||
Sbjct: 161 ttcccacggctttcttgagctt 140



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 90  tcaagaaagccgtggaaaaatatga 114
           ||||||||||||||| |||||||||
Sbjct: 144 tcaagaaagccgtgggaaaatatga 168




>41141_tcc-MIR396d:mirbase
          Length = 182

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 86  aagttcaagaaagccgtggaaaa 108
           |||||||||||||||||||||||
Sbjct: 41  aagttcaagaaagccgtggaaaa 19



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 13  ttcccacggctttcttgagcttc 35
           |||||||||||||||||||||||
Sbjct: 161 ttcccacggctttcttgagcttc 139




>41440_ptc-MIR396f:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 87  agttcaagaaagccgtggaaaa 108
           ||||||||||||||||||||||
Sbjct: 30  agttcaagaaagccgtggaaaa 9




>41438_ptc-MIR396d:mirbase
          Length = 154

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 14  tcccacggctttcttgagcttc 35
           ||||||||||||||||||||||
Sbjct: 146 tcccacggctttcttgagcttc 125



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 84  ggaagttcaagaaagccgtggaaaa 108
           |||||||||||||||| ||||||||
Sbjct: 33  ggaagttcaagaaagctgtggaaaa 9




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 84  ggaagttcaagaaagccgtggaaaaa 109
           |||||||||||||||| |||||||||
Sbjct: 33  ggaagttcaagaaagctgtggaaaaa 8



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  gaagttcaagaaagccgtggaa 106
           ||||||||||||||||||||||
Sbjct: 73  gaagttcaagaaagccgtggaa 94




>41243_csi-MIR396c:mirbase
          Length = 178

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 85  gaagttcaagaaagccgtggaaaaatatga 114
           ||||||||||||||| ||||||||| ||||
Sbjct: 34  gaagttcaagaaagctgtggaaaaacatga 5




>42811_zma-MIR396e:mirbase
          Length = 166

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 11  tcttcccacggctttcttgagcttc 35
           |||||||||||||||||||| ||||
Sbjct: 166 tcttcccacggctttcttgaccttc 142




>41795_bdi-MIR396e:mirbase
          Length = 201

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 83  gggaagttcaagaaagccgtggaaa 107
           ||||||||||||||||| |||||||
Sbjct: 55  gggaagttcaagaaagctgtggaaa 31




>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 87  agttcaagaaagccgtggaaaaata 111
           ||||||||||||| |||||||||||
Sbjct: 39  agttcaagaaagctgtggaaaaata 15




>41212_ccl-MIR396:mirbase
          Length = 277

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 84  ggaagttcaagaaagccgtggaaaa 108
           |||||||||||||||| ||||||||
Sbjct: 165 ggaagttcaagaaagctgtggaaaa 141




>40086_ath-MIR396b:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 86  aagttcaagaaagccgtggaaaaatatga 114
           |||||||||||||| |||||||| |||||
Sbjct: 31  aagttcaagaaagctgtggaaaagtatga 3




>39741_smo-MIR396:mirbase
          Length = 168

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 88  gttcaagaaagccgtggaaaa 108
           |||||||||||||||||||||
Sbjct: 29  gttcaagaaagccgtggaaaa 9




>39426_pta-MIR396:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 86  aagttcaagaaagccgtggaaaaatatga 114
           |||||||||||||| |||||||| |||||
Sbjct: 37  aagttcaagaaagctgtggaaaagtatga 9




>41661_vvi-MIR396b:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 35  gaagttcaagaaagctgtggaaaa 12




>41439_ptc-MIR396e:mirbase
          Length = 145

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 32  gaagttcaagaaagctgtggaaaa 9




>40726_mtr-MIR396a:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 27  gaagttcaagaaagctgtggaaaa 4




>40476_gma-MIR396d:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 32  gaagttcaagaaagctgtggaaaa 9




>40475_gma-MIR396c:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 42  gaagttcaagaaagctgtggaaaa 19




>40474_gma-MIR396b:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 42  gaagttcaagaaagctgtggaaaa 19




>40379_rco-MIR396:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  gaagttcaagaaagccgtggaaaa 108
           ||||||||||||||| ||||||||
Sbjct: 27  gaagttcaagaaagctgtggaaaa 4