miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39381_pab-MIR396c:mirbase
          Length = 143

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcatatttttccacggctttcttgaacttcccgatcgggagtgttggcgacagatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  ctctcatatttttccacggctttcttgaacttcccgatcgggagtgttggcgacagatcg 73

                                                                 
Query: 61  caccgctaacagatccgcatacgaagctcaagaaagccgtgggaagaatattaa 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  caccgctaacagatccgcatacgaagctcaagaaagccgtgggaagaatattaa 127




>39380_pab-MIR396b:mirbase
          Length = 116

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 87/106 (82%), Gaps = 4/106 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcatatttttccacggctttcttgaacttcc----cgatcgggagtgttggcgacagatc 59
           ||||| ||||||||||||||||||||||| |    ||||| ||  |||||||| | ||||
Sbjct: 1   tcatagttttccacggctttcttgaacttacttcacgatcaggtctgttggcggccgatc 60

                                                         
Query: 60  gcaccgctaacagatccgcatacgaagctcaagaaagccgtgggaa 105
           ||| || |||||||||||  |   ||| ||||||||||||||||||
Sbjct: 61  gcatcgataacagatccgggtgacaagatcaagaaagccgtgggaa 106




>39878_aly-MIR396b:mirbase
          Length = 188

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 4  tcatatttttccacggctttcttgaactt 32
          |||||||||||||| ||||||||||||||
Sbjct: 24 tcatatttttccacagctttcttgaactt 52




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 10  ttttccacggctttcttgaacttc 33
           ||||||||||||||||||||||||
Sbjct: 126 ttttccacggctttcttgaacttc 103




>41441_ptc-MIR396g:mirbase
          Length = 168

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ttttccacggctttcttgaactt 32
          |||||||||||||||||||||||
Sbjct: 9  ttttccacggctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  aagctcaagaaagccgtgggaa 105
           ||||||||||||||||||||||
Sbjct: 140 aagctcaagaaagccgtgggaa 161



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 4   tcatatttttccacggctttcttga 28
           ||||||||| |||||||||||||||
Sbjct: 168 tcatattttcccacggctttcttga 144




>41141_tcc-MIR396d:mirbase
          Length = 182

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ttttccacggctttcttgaactt 32
          |||||||||||||||||||||||
Sbjct: 19 ttttccacggctttcttgaactt 41



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  gaagctcaagaaagccgtgggaa 105
           |||||||||||||||||||||||
Sbjct: 139 gaagctcaagaaagccgtgggaa 161




>41440_ptc-MIR396f:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ttttccacggctttcttgaact 31
          ||||||||||||||||||||||
Sbjct: 9  ttttccacggctttcttgaact 30




>41438_ptc-MIR396d:mirbase
          Length = 154

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 83  gaagctcaagaaagccgtggga 104
           ||||||||||||||||||||||
Sbjct: 125 gaagctcaagaaagccgtggga 146



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 10 ttttccacggctttcttgaacttcc 34
          |||||||| ||||||||||||||||
Sbjct: 9  ttttccacagctttcttgaacttcc 33




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 9  tttttccacggctttcttgaacttcc 34
          ||||||||| ||||||||||||||||
Sbjct: 8  tttttccacagctttcttgaacttcc 33



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 ttccacggctttcttgaacttc 33
          ||||||||||||||||||||||
Sbjct: 94 ttccacggctttcttgaacttc 73




>41243_csi-MIR396c:mirbase
          Length = 178

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  tcatatttttccacggctttcttgaacttc 33
          |||| ||||||||| |||||||||||||||
Sbjct: 5  tcatgtttttccacagctttcttgaacttc 34




>42811_zma-MIR396e:mirbase
          Length = 166

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 83  gaagctcaagaaagccgtgggaaga 107
           |||| ||||||||||||||||||||
Sbjct: 142 gaaggtcaagaaagccgtgggaaga 166




>41795_bdi-MIR396e:mirbase
          Length = 201

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tttccacggctttcttgaacttccc 35
          ||||||| |||||||||||||||||
Sbjct: 31 tttccacagctttcttgaacttccc 55




>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 7  tatttttccacggctttcttgaact 31
          ||||||||||| |||||||||||||
Sbjct: 15 tatttttccacagctttcttgaact 39




>41212_ccl-MIR396:mirbase
          Length = 277

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 10  ttttccacggctttcttgaacttcc 34
           |||||||| ||||||||||||||||
Sbjct: 141 ttttccacagctttcttgaacttcc 165




>40086_ath-MIR396b:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 4  tcatatttttccacggctttcttgaactt 32
          ||||| |||||||| ||||||||||||||
Sbjct: 3  tcatacttttccacagctttcttgaactt 31




>39741_smo-MIR396:mirbase
          Length = 168

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ttttccacggctttcttgaac 30
          |||||||||||||||||||||
Sbjct: 9  ttttccacggctttcttgaac 29




>39426_pta-MIR396:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 4  tcatatttttccacggctttcttgaactt 32
          ||||| |||||||| ||||||||||||||
Sbjct: 9  tcatacttttccacagctttcttgaactt 37




>41661_vvi-MIR396b:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 12 ttttccacagctttcttgaacttc 35




>41439_ptc-MIR396e:mirbase
          Length = 145

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 9  ttttccacagctttcttgaacttc 32




>40726_mtr-MIR396a:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 4  ttttccacagctttcttgaacttc 27




>40476_gma-MIR396d:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 9  ttttccacagctttcttgaacttc 32




>40475_gma-MIR396c:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 19 ttttccacagctttcttgaacttc 42




>40474_gma-MIR396b:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 19 ttttccacagctttcttgaacttc 42




>40379_rco-MIR396:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 ttttccacggctttcttgaacttc 33
          |||||||| |||||||||||||||
Sbjct: 4  ttttccacagctttcttgaacttc 27