miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                     
Query: 12 atgatcctctttgtattcttccacagctttcttgaactgcatc 54
          ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2  atgatcctctttgtatttttccacagctttcttgaactgcatc 44



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 119 ttgcgggtcaataaagctgtgggaagatacagataggctcaataaaa 165
           |||||| |||||||||||||||||||||||| | ||| |||||||||
Sbjct: 82  ttgcggttcaataaagctgtgggaagatacaaacaggttcaataaaa 128




>40473_gma-MIR396a:mirbase
          Length = 140

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 18 ctctttgtattcttccacagctttcttgaactgcatcca 56
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcatcca 47



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 119 ttgcgggtcaataaagctgtgggaagatacagataggctcaa 160
           |||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 98  ttgcggttcaataaagctgtgggaagatacagatagggtcaa 139




>40646_lja-MIR396:mirbase
          Length = 108

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 16 tcctctttgtattcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 119 ttgcgggtcaataaagctgtgggaagatacagatagg 155
           |||||| |||||||||||||||||||||| |||||||
Sbjct: 71  ttgcggttcaataaagctgtgggaagatatagatagg 107




>41139_tcc-MIR396b:mirbase
          Length = 151

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 17 cctctttgtattcttccacagctttcttgaactgc 51
          |||||||||||||||||||||||||||||||||||
Sbjct: 8  cctctttgtattcttccacagctttcttgaactgc 42



 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 126 tcaataaagctgtgggaagatac 148
           |||||||||||||||||||||||
Sbjct: 115 tcaataaagctgtgggaagatac 137




>41663_vvi-MIR396d:mirbase
          Length = 120

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 20 ctttgtattcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 119 ttgcgggtcaataaagctgtgggaagatac 148
           |||||| |||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagatac 114




>41436_ptc-MIR396b:mirbase
          Length = 132

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 20 ctttgtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 120 tgcgggtcaataaagctgtgggaagataca 149
           ||||| ||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131




>40727_mtr-MIR396b:mirbase
          Length = 95

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 25 tattcttccacagctttcttgaactgcatcca 56
          ||||||||||||||||||||||||||||||||
Sbjct: 1  tattcttccacagctttcttgaactgcatcca 32



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 119 ttgcgggtcaataaagctgtgggaagata 147
           |||||| ||||||||||||||||||||||
Sbjct: 67  ttgcggttcaataaagctgtgggaagata 95




>39877_aly-MIR396a:mirbase
          Length = 172

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 17 cctctttgtattcttccacagctttcttgaactgca 52
          ||||| ||||||||||||||||||||||||||||||
Sbjct: 11 cctctctgtattcttccacagctttcttgaactgca 46



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 119 ttgcgggtcaataaagctgtgggaagatac 148
           |||||| |||||||||||||||||||||||
Sbjct: 128 ttgcggttcaataaagctgtgggaagatac 157




>40085_ath-MIR396a:mirbase
          Length = 151

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 23 tgtattcttccacagctttcttgaactgca 52
          ||||||||||||||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 119 ttgcgggtcaataaagctgtgggaagatacaga 151
           |||||| ||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatacaga 150




>41435_ptc-MIR396a:mirbase
          Length = 123

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 gtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
           |||||| ||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagataca 122




>41058_ghr-MIR396b:mirbase
          Length = 135

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 gtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
           |||||| ||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132




>41057_ghr-MIR396a:mirbase
          Length = 136

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 gtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
           |||||| ||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132




>42814_zma-MIR396h:mirbase
          Length = 124

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 19  tctttgtattcttccacagctttcttgaactgcatc 54
           |||||||  |||||||||||||||||||||||||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactgcatc 74




>42808_zma-MIR396b:mirbase
          Length = 136

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45




>42583_sbi-MIR396b:mirbase
          Length = 128

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45




>42461_sof-MIR396:mirbase
          Length = 134

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45




>42813_zma-MIR396g:mirbase
          Length = 114

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 28  tcttccacagctttcttgaactgcatc 54
           |||||||||||||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgcatc 87




>42027_osa-MIR396b:mirbase
          Length = 116

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacagctttcttgaactgcatc 54
          |||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatc 35




>41794_bdi-MIR396d:mirbase
          Length = 152

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacagctttcttgaactgcatc 54
          |||||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgcatc 57




>41241_csi-MIR396a:mirbase
          Length = 153

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 16 tcctctttgtattcttccacagctttcttgaactg 50
          ||||||||||  |||||||||||||||||||||||
Sbjct: 7  tcctctttgtgatcttccacagctttcttgaactg 41



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 15  atcctctttgtattcttccacagctttcttgaa 47
           |||||||| ||| | ||||||||||||||||||
Sbjct: 122 atcctcttagtagttttccacagctttcttgaa 90




>42807_zma-MIR396a:mirbase
          Length = 137

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44




>42582_sbi-MIR396a:mirbase
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44




>42472_ssp-MIR396:mirbase
          Length = 95

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 ttccacagctttcttgaactgcatc 54
          |||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>42026_osa-MIR396a:mirbase
          Length = 154

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 28 tcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33




>41793_bdi-MIR396c:mirbase
          Length = 153

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 28 tcttccacagctttcttgaactgc 51
          ||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54




>41188_aqc-MIR396a:mirbase
          Length = 122

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 ttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 119 ttgcgggtcaataaagctgtgggaa 143
           |||||| ||||||||||||||||||
Sbjct: 97  ttgcggttcaataaagctgtgggaa 121




>41662_vvi-MIR396c:mirbase
          Length = 108

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 28 tcttccacagctttcttgaactg 50
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31




>40477_gma-MIR396e:mirbase
          Length = 114

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 28 tcttccacagctttcttgaactg 50
          |||||||||||||||||||||||
Sbjct: 5  tcttccacagctttcttgaactg 27




>39379_pab-MIR396a:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 tcttccacagctttcttgaact 49
          ||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaact 35




>41138_tcc-MIR396a:mirbase
          Length = 146

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 ttccacagctttcttgaactg 50
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41




>39878_aly-MIR396b:mirbase
          Length = 188

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 25 tattcttccacagctttcttgaact 49
          |||| ||||||||||||||||||||
Sbjct: 27 tatttttccacagctttcttgaact 51




>42812_zma-MIR396f:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21




>42811_zma-MIR396e:mirbase
          Length = 166

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21




>42584_sbi-MIR396c:mirbase
          Length = 162

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42028_osa-MIR396c:mirbase
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41795_bdi-MIR396e:mirbase
          Length = 201

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51




>41661_vvi-MIR396b:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>41660_vvi-MIR396a:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>41439_ptc-MIR396e:mirbase
          Length = 145

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41438_ptc-MIR396d:mirbase
          Length = 154

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41243_csi-MIR396c:mirbase
          Length = 178

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaact 32




>41212_ccl-MIR396:mirbase
          Length = 277

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  ttccacagctttcttgaact 49
           ||||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaact 162




>41189_aqc-MIR396b:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>41140_tcc-MIR396c:mirbase
          Length = 152

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40726_mtr-MIR396a:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40476_gma-MIR396d:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>40475_gma-MIR396c:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40474_gma-MIR396b:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40379_rco-MIR396:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40296_bna-MIR396a:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>40086_ath-MIR396b:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>39426_pta-MIR396:mirbase
          Length = 119

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36