miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41156_tcc-MIR403b:mirbase
Length = 123
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 82 cgatggtgttagattcacgcacaaactcttgatttgtctcctct 125
|||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 75 cgatggtgttagattcacgcacaaactcgtgatctgtctcctct 118
>40390_rco-MIR403b:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 79 atccgatggtgttagattcacgcacaaactcttgat 114
|||| |||||||||||||||||||||||||| ||||
Sbjct: 62 atccaatggtgttagattcacgcacaaactcgtgat 97
>40389_rco-MIR403a:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 79 atccgatggtgttagattcacgcacaaactcttgat 114
|||| |||||||||||||||||||||||||| ||||
Sbjct: 59 atcccatggtgttagattcacgcacaaactcgtgat 94
>41461_ptc-MIR403b:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 76 accatccgatggtgttagattcacgcacaaactc 109
||||||| |||| |||||||||||||||||||||
Sbjct: 57 accatccaatggcgttagattcacgcacaaactc 90
>41251_csi-MIR403:mirbase
Length = 130
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 87 gtgttagattcacgcacaaactcttgatttgtct 120
||||||||||||||||||||||| |||| |||||
Sbjct: 97 gtgttagattcacgcacaaactcgtgatgtgtct 130
>41681_vvi-MIR403e:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 atctcaagtttgtgcgtgaatccgaccccatc 48
|||||||||||||||||||||| ||||||||
Sbjct: 5 atctcaagtttgtgcgtgaatcaaaccccatc 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 gttagattcacgcacaaactc 109
|||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactc 104
>41680_vvi-MIR403d:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 ggtgttagattcacgcacaaactc 109
||||||||||||||||||||||||
Sbjct: 52 ggtgttagattcacgcacaaactc 75
>41679_vvi-MIR403c:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 atctcaagtttgtgcgtgaatccgaccccatc 48
|||||||||||||||||||||| ||||||||
Sbjct: 5 atctcaagtttgtgcgtgaatcaaaccccatc 36
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 gttagattcacgcacaaactcttgatttgtc 119
||||||||||||||||||||| |||| ||||
Sbjct: 84 gttagattcacgcacaaactcgtgatctgtc 114
>41678_vvi-MIR403b:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 ggtgttagattcacgcacaaactc 109
||||||||||||||||||||||||
Sbjct: 52 ggtgttagattcacgcacaaactc 75
>41677_vvi-MIR403a:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 atctcaagtttgtgcgtgaatccgaccccatc 48
|||||||||||||||||||||| ||||||||
Sbjct: 5 atctcaagtttgtgcgtgaatcaaaccccatc 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 gttagattcacgcacaaactc 109
|||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactc 104
>41682_vvi-MIR403f:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 atggtgttagattcacgcacaaactc 109
||||| ||||||||||||||||||||
Sbjct: 72 atggtcttagattcacgcacaaactc 97
>41155_tcc-MIR403a:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 tgttagattcacgcacaaactc 109
||||||||||||||||||||||
Sbjct: 84 tgttagattcacgcacaaactc 105
>41462_ptc-MIR403c:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 ttagattcacgcacaaactc 109
||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactc 78
>41460_ptc-MIR403a:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 ttagattcacgcacaaactc 109
||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactc 122
>40101_ath-MIR403:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 ttagattcacgcacaaactc 109
||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactc 122
>39896_aly-MIR403:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 ttagattcacgcacaaactc 109
||||||||||||||||||||
Sbjct: 91 ttagattcacgcacaaactc 110
