miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40271_bna-MIR168:mirbase
          Length = 133

 Score =  218 bits (110), Expect = 9e-58
 Identities = 125/130 (96%)
 Strand = Plus / Plus

                                                                       
Query: 10  cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 69
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4   cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63

                                                                       
Query: 70  gttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 129
            ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ctttccatggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 123

                     
Query: 130 tccgacgtga 139
           ||||||||||
Sbjct: 124 tccgacgtga 133




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                      
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 69
          |||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| 
Sbjct: 5  cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64

                                 
Query: 70 gttttcatggttggctcgtgagc 92
           || |||||||||| | ||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 75.8 bits (38), Expect = 8e-15
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctg 55
          |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 7  cggcggtctctaattcgcttggtgcaggtcgggaactgattggctg 52




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 75.8 bits (38), Expect = 8e-15
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 10  cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 69
           |||||| ||| |||||||||||||||||||||||||||||| |||||||    |||||| 
Sbjct: 29  cggcggtctcggattcgcttggtgcaggtcgggaactgattagctgacaattacacgtgt 88

                         
Query: 70  gttttcatggttgg 83
           ||| ||||||||||
Sbjct: 89  gttgtcatggttgg 102




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggct 54
          |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 7  cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 51



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 100 ggatcccgccttgtatcaagtgaatccgagtccgacgtgaaagat 144
           ||||||||||||| ||||| |||||| ||| |||| |||| ||||
Sbjct: 139 ggatcccgccttgcatcaactgaatcggagaccgaggtgagagat 183




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggct 54
          |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 6  cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 50




>41347_ptc-MIR168a:mirbase
          Length = 160

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 17 ctctgattcgcttggtgcaggtcgggaactgatt 50
          ||||||||||||||||||||||||||||||||||
Sbjct: 4  ctctgattcgcttggtgcaggtcgggaactgatt 37




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 22 attcgcttggtgcaggtcgggaactgattggct 54
          |||||||||||||||||||||||||||||||||
Sbjct: 4  attcgcttggtgcaggtcgggaactgattggct 36




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 92/110 (83%), Gaps = 5/110 (4%)
 Strand = Plus / Plus

                                                                       
Query: 21  gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 75
           |||||||||||||||||||||||||  ||| ||||||||||||| ||||  ||||    |
Sbjct: 15  gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 74

                                                             
Query: 76  atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 125
            |  |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 75  tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124




>41348_ptc-MIR168b:mirbase
          Length = 136

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 17 ctctgattcgcttggtgcaggtcgggaactgatt 50
          |||| |||||||||||||||||||||||||||||
Sbjct: 4  ctctaattcgcttggtgcaggtcgggaactgatt 37




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                           
Query: 21 gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtg 68
          |||||||||||||||||||||||||  ||| ||||||||||||| ||||
Sbjct: 21 gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtg 69




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 12 gcggcctctgattcgcttggtgcaggtcgggaac 45
          |||| |||| ||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 17 ctctgattcgcttggtgcaggtcgggaac 45
          |||| ||||||||||||||||||||||||
Sbjct: 4  ctctaattcgcttggtgcaggtcgggaac 32




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 99  cggatcccgccttgtatcaagtgaatc 125
           |||||||||||||| ||||||||||||
Sbjct: 62  cggatcccgccttgcatcaagtgaatc 88




>42528_sbi-MIR168:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 101 gatcccgccttgtatcaagtgaatccgag 129
           |||||||||||| | ||||||||||||||
Sbjct: 66  gatcccgccttgcaccaagtgaatccgag 94