miRNEST 2.0, an integrative microRNA resource :: BLAST
>42463_sof-MIR408b:mirbase
Length = 286
Score = 527 bits (266), Expect = e-150
Identities = 266/266 (100%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250
Query: 241 actgcctcttccctggctccccaccg 266
||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276
>42464_sof-MIR408c:mirbase
Length = 286
Score = 519 bits (262), Expect = e-148
Identities = 265/266 (99%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250
Query: 241 actgcctcttccctggctccccaccg 266
||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276
>42462_sof-MIR408a:mirbase
Length = 283
Score = 476 bits (240), Expect = e-135
Identities = 260/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 cctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgc 247
Query: 241 actgcctcttccctggctccccaccg 266
||||||||||||||||||||||||||
Sbjct: 248 actgcctcttccctggctccccaccg 273
>42466_sof-MIR408e:mirbase
Length = 283
Score = 452 bits (228), Expect = e-128
Identities = 257/266 (96%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
|||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 191 cctgacctgagacggatgagagctcagctggtgtcc---tgttgttgcttacttccctgc 247
Query: 241 actgcctcttccctggctccccaccg 266
|||| |||||||||||||||||||||
Sbjct: 248 actgactcttccctggctccccaccg 273
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 446 bits (225), Expect = e-126
Identities = 245/251 (97%), Gaps = 3/251 (1%)
Strand = Plus / Plus
Query: 9 gagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttctgtcc 68
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttctgtcc 60
Query: 69 tccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggatttgtgaga 128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggatttgtgaga 120
Query: 129 gttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatggcctgacct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatggcctgacct 180
Query: 189 gagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctc 248
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 gagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgcactgcctc 237
Query: 249 ttccctggctc 259
|||||||||||
Sbjct: 238 ttccctggctc 248
>42465_sof-MIR408d:mirbase
Length = 215
Score = 180 bits (91), Expect = 4e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 172 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 232 ctcccctgcactgcctcttccctggctccccaccg 266
| |||||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccg 205
Score = 107 bits (54), Expect = 4e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 gtttgcttgctcacaaaacg 113
||||||||||||||||||||
Sbjct: 75 gtttgcttgctcacaaaacg 94
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 167 bits (84), Expect = 5e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 172 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 152
Query: 232 ctcccctgcactgcctcttccctggctc 259
| ||||||||||||||||||||||||||
Sbjct: 153 cacccctgcactgcctcttccctggctc 180
Score = 101 bits (51), Expect = 3e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 9 gagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 63
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 55
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 gtttgcttgctcacaaaacg 113
||||||||||||||||||||
Sbjct: 57 gtttgcttgctcacaaaacg 76
>42600_sbi-MIR408:mirbase
Length = 205
Score = 127 bits (64), Expect = 5e-30
Identities = 96/109 (88%), Gaps = 12/109 (11%)
Strand = Plus / Plus
Query: 150 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 209
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
Query: 210 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 258
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 73.8 bits (37), Expect = 6e-14
Identities = 51/55 (92%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 12 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 63
||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>42829_zma-MIR408:mirbase
Length = 191
Score = 83.8 bits (42), Expect = 6e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 51
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 219 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 260
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
>42052_osa-MIR408:mirbase
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 220 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 262
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaaca 49
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>42830_zma-MIR408b:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 1e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 221 gttgttgcttcctcccctgcactgcctcttccctggctc 259
||||||||| |||||||||||||||||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
Score = 50.1 bits (25), Expect = 9e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 11 gacagggatgaggcagagcatggg-atggggccatcaacaaaatt 54
|||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
>42647_tae-MIR408:mirbase
Length = 187
Score = 61.9 bits (31), Expect = 2e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 220 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 262
|||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
Score = 48.1 bits (24), Expect = 3e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaacaaaattt 55
||||||||||||| |||||||| |||||| ||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>41252_csi-MIR408:mirbase
Length = 153
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 230 tcctcccctgcactgcctcttccctggctc 259
||||||| ||||||||||||||||||||||
Sbjct: 113 tcctcccatgcactgcctcttccctggctc 142
>40391_rco-MIR408:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 234 cccctgcactgcctcttccctggct 258
|||||||||||||||||||||||||
Sbjct: 64 cccctgcactgcctcttccctggct 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctccc 261
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>39897_aly-MIR408:mirbase
Length = 211
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctccc 261
||||||||||||||||||||||||
Sbjct: 118 tgcactgcctcttccctggctccc 141
>41683_vvi-MIR408:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctc 259
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>40405_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctc 259
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>40404_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctc 259
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>39428_pta-MIR408:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctc 259
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>41463_ptc-MIR408:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 40.1 bits (20), Expect = 9e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 agacagggatgaggcagagcatgg 33
||||| ||||||||||||||||||
Sbjct: 85 agacaaggatgaggcagagcatgg 62
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
