miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>24868_cin-mir-3575:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 13 gaatcaccaaccacgtagtatcggagcattgtgtgtctaatactgcctggtaatggtgat 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaatcaccaaccacgtagtatcggagcattgtgtgtctaatactgcctggtaatggtgat 1
>24869_cin-mir-3575:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 13 gaatcaccaaccacgtagtatcggagcattgtgtgtctaatactgcctggtaatggtgat 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaatcaccaaccacgtagtatcggagcattgtgtgtctaatactgcctggtaatggtgat 1
>34401_dre-mir-429b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 tgtgtctaatactgcctggtaatg 67
||||||||||||||||||||||||
Sbjct: 61 tgtgtctaatactgcctggtaatg 84
>25992_gga-mir-200b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatggtgattg 74
|||||||||||||||||||| ||||||
Sbjct: 44 tctaatactgcctggtaatgatgattg 70
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 42 tgtgtgtctaatactgcctggtaatggtgat 72
||||| |||||||||||||||||||| ||||
Sbjct: 31 tgtgtttctaatactgcctggtaatgatgat 61
>31529_oan-mir-200b:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 42 tgtgtgtctaatactgcctggtaatggtgat 72
||||| |||||||||||||||||||| ||||
Sbjct: 53 tgtgtttctaatactgcctggtaatgatgat 83
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatggtgatt 73
|||||||||||||||||||| |||||
Sbjct: 51 tctaatactgcctggtaatgatgatt 76
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatggtgat 72
|||||||||||||||||||| ||||
Sbjct: 39 tctaatactgcctggtaatgatgat 63
>34356_dre-mir-200b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatggtgat 72
|||||||||||||||||||| ||||
Sbjct: 48 tctaatactgcctggtaatgatgat 72
>34629_fru-mir-200b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatggtgat 72
|||||||||||||||||||| ||||
Sbjct: 48 tctaatactgcctggtaatgatgat 72
>34776_tni-mir-200b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatggtgat 72
|||||||||||||||||||| ||||
Sbjct: 37 tctaatactgcctggtaatgatgat 61
>25332_csa-mir-200:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 taatactgcctggtaatggtgatt 73
|||||||||||||||||| |||||
Sbjct: 44 taatactgcctggtaatgatgatt 67
>25519_pma-mir-200b:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatg 64
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 43 tctaatactgcctggtaatg 62
>27088_eca-mir-200b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 42 tctaatactgcctggtaatg 61
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 55 tctaatactgcctggtaatg 74
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 43 tctaatactgcctggtaatg 62
>32789_rno-mir-200b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 55 tctaatactgcctggtaatg 74
>33279_bta-mir-200b:mirbase
Length = 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 36 tctaatactgcctggtaatg 55
>34357_dre-mir-200c:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatg 67
||||||||||||||||||||
Sbjct: 49 tctaatactgcctggtaatg 68
>34400_dre-mir-429:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 tgtgtctaatactgcctggtaatg 67
|||||||||||||| |||||||||
Sbjct: 45 tgtgtctaatactgtctggtaatg 68
>26843_cfa-mir-429:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gtgtctaatactgcctggtaatg 67
||||||||||||| |||||||||
Sbjct: 48 gtgtctaatactgtctggtaatg 70
