miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>24848_cin-mir-200:mirbase
Length = 86
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattagacacacaatgctccgatactacgtggttggtgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atcaccattaccaggcagtattagacacacaatgctccgatactacgtggttggtgattc 13
>24868_cin-mir-3575:mirbase
Length = 60
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 atcaccattaccaggcagtattagacacacaatgctccgatactacgtggttggtgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaccattaccaggcagtattagacacacaatgctccgatactacgtggttggtgattc 60
>34401_dre-mir-429b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattagacaca 29
||||||||||||||||||||||||
Sbjct: 84 cattaccaggcagtattagacaca 61
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattagacacaca 31
|||| |||||||||||||||||||| |||||
Sbjct: 61 atcatcattaccaggcagtattagaaacaca 31
>31529_oan-mir-200b:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattagacacaca 31
|||| |||||||||||||||||||| |||||
Sbjct: 83 atcatcattaccaggcagtattagaaacaca 53
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 75 atcatcattaccaggcagtattaga 51
>25992_gga-mir-200b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 68 atcatcattaccaggcagtattaga 44
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 63 atcatcattaccaggcagtattaga 39
>34356_dre-mir-200b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 72 atcatcattaccaggcagtattaga 48
>34629_fru-mir-200b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 72 atcatcattaccaggcagtattaga 48
>34776_tni-mir-200b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 61 atcatcattaccaggcagtattaga 37
>25519_pma-mir-200b:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 64 cattaccaggcagtattaga 45
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 62 cattaccaggcagtattaga 43
>27088_eca-mir-200b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 61 cattaccaggcagtattaga 42
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 74 cattaccaggcagtattaga 55
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 62 cattaccaggcagtattaga 43
>32789_rno-mir-200b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 74 cattaccaggcagtattaga 55
>33279_bta-mir-200b:mirbase
Length = 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 55 cattaccaggcagtattaga 36
>34357_dre-mir-200c:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattaga 25
||||||||||||||||||||
Sbjct: 68 cattaccaggcagtattaga 49
>34400_dre-mir-429:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattagacaca 29
||||||||| ||||||||||||||
Sbjct: 68 cattaccagacagtattagacaca 45
>25332_csa-mir-200:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtatta 23
|||| ||||||||||||||||||
Sbjct: 66 atcatcattaccaggcagtatta 44
>26843_cfa-mir-429:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 6 cattaccaggcagtattagacac 28
||||||||| |||||||||||||
Sbjct: 70 cattaccagacagtattagacac 48
