miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>24921_cin-mir-4003a-1:mirbase
          Length = 58

 Score =  115 bits (58), Expect = 3e-27
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                    
Query: 1  tgagttggttatacattcttgcggtattaaagtaacagcaagaattttaaccaacaca 58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgagttggttatacattcttgcggtattaaagtaacagcaagaattttaaccaacaca 58

>24927_cin-mir-4003a-4:mirbase
          Length = 58

 Score = 99.6 bits (50), Expect = 2e-22
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                    
Query: 1  tgagttggttatacattcttgcggtattaaagtaacagcaagaattttaaccaacaca 58
          |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 1  tgagttggttatacattcttgcggtattcaagtaacagcaagaattttaaccagcaca 58

>24923_cin-mir-4003a-2:mirbase
          Length = 60

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 55/60 (91%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgagttggttatacattcttgcggtattaaag--taacagcaagaattttaaccaacaca 58
          ||||||||||||||||||||||| |||| |||  ||| ||||||||||||||||||||||
Sbjct: 1  tgagttggttatacattcttgcgatatttaagtataatagcaagaattttaaccaacaca 60

>24924_cin-mir-4003a-2:mirbase
          Length = 60

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 55/60 (91%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgagttggttatacattcttgcggtattaaag--taacagcaagaattttaaccaacaca 58
          ||||||||||||||||||||||| |||| |||  ||| ||||||||||||||||||||||
Sbjct: 1  tgagttggttatacattcttgcgatatttaagtataatagcaagaattttaaccaacaca 60

>24925_cin-mir-4003a-3:mirbase
          Length = 60

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 55/60 (91%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgagttggttatacattcttgcggtattaaag--taacagcaagaattttaaccaacaca 58
          |||||||||||||||||||||| ||||| |||  ||| ||||||||||||||||||||||
Sbjct: 1  tgagttggttatacattcttgcagtatttaagtataatagcaagaattttaaccaacaca 60

>24926_cin-mir-4003a-3:mirbase
          Length = 60

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 55/60 (91%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgagttggttatacattcttgcggtattaaag--taacagcaagaattttaaccaacaca 58
          |||||||||||||||||||||| ||||| |||  ||| ||||||||||||||||||||||
Sbjct: 1  tgagttggttatacattcttgcagtatttaagtataatagcaagaattttaaccaacaca 60