• Home
• Browse miRNAs
• Deep-seq predictions
• Mirtrons
• miRNA genes
• Degradomes
• Download
• Upload
• Contact

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>24944_cin-mir-4006a-3:mirbase
          Length = 51

 Score =  101 bits (51), Expect = 4e-23
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                             
Query: 1  tggaacatgtaagtaagggctgtattattctgtcattacttccatgtttca 51
          |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggaacatgtaagtaagggctgtattattctgtcattacttccatgtttca 51

>24939_cin-mir-4006a-1:mirbase
          Length = 49

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tggaacatgtaagtaagggctgt 23
          |||||||||||||||||||||||
Sbjct: 1  tggaacatgtaagtaagggctgt 23

>24940_cin-mir-4006a-1:mirbase
          Length = 49

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tggaacatgtaagtaagggctgt 23
          |||||||||||||||||||||||
Sbjct: 1  tggaacatgtaagtaagggctgt 23

>24941_cin-mir-4006a-2:mirbase
          Length = 53

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tggaacatgtaagtaagggctg 22
          ||||||||||||||||||||||
Sbjct: 1  tggaacatgtaagtaagggctg 22

>24942_cin-mir-4006a-2:mirbase
          Length = 53

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tggaacatgtaagtaagggctg 22
          ||||||||||||||||||||||
Sbjct: 1  tggaacatgtaagtaagggctg 22

>24947_cin-mir-4006c:mirbase
          Length = 51

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  tggaacatgtaagtaagggctgt 23
          |||||||||||| ||||||||||
Sbjct: 1  tggaacatgtaaataagggctgt 23

>24948_cin-mir-4006c:mirbase
          Length = 51

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  tggaacatgtaagtaagggctgt 23
          |||||||||||| ||||||||||
Sbjct: 1  tggaacatgtaaataagggctgt 23