miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgatt 67
||||||||||||||||||||||||
Sbjct: 53 taatactgcctggtaatgatgatt 76
>25992_gga-mir-200b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgatt 67
||||||||||||||||||||||||
Sbjct: 46 taatactgcctggtaatgatgatt 69
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 41 taatactgcctggtaatgatgat 63
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 39 taatactgcctggtaatgatgat 61
>31529_oan-mir-200b:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 61 taatactgcctggtaatgatgat 83
>34356_dre-mir-200b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 50 taatactgcctggtaatgatgat 72
>34629_fru-mir-200b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 50 taatactgcctggtaatgatgat 72
>34776_tni-mir-200b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 39 taatactgcctggtaatgatgat 61
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 45 taatactgcctggtaatgatga 66
>27088_eca-mir-200b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 44 taatactgcctggtaatgatga 65
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 57 taatactgcctggtaatgatga 78
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 45 taatactgcctggtaatgatga 66
>32789_rno-mir-200b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 57 taatactgcctggtaatgatga 78
>33279_bta-mir-200b:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 38 taatactgcctggtaatgatga 59
>25519_pma-mir-200b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatg 64
|||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatg 67
>34357_dre-mir-200c:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatg 64
|||||||||||||||||||||
Sbjct: 51 taatactgcctggtaatgatg 71
>24692_bfl-mir-200a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aatactgcctggtaatgatg 64
||||||||||||||||||||
Sbjct: 61 aatactgcctggtaatgatg 80
>24848_cin-mir-200:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgatt 67
|||||||||||||||||| |||||
Sbjct: 50 taatactgcctggtaatggtgatt 73
>24868_cin-mir-3575:mirbase
Length = 60
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||| ||||
Sbjct: 23 taatactgcctggtaatggtgat 1
>24869_cin-mir-3575:mirbase
Length = 60
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||| ||||
Sbjct: 23 taatactgcctggtaatggtgat 1
