miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>24642_bfl-let-7a-2:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 tgaggtgaggtagtaggttgtaaagttg 30
|||||||||||||||||||||| |||||
Sbjct: 16 tgaggtgaggtagtaggttgtatagttg 43
>24641_bfl-let-7a-1:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tgaggtgaggtagtaggttgtaaagtt 29
|||||||||||||||||||||| ||||
Sbjct: 2 tgaggtgaggtagtaggttgtatagtt 28
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||||| |||| ||||||
Sbjct: 2 ggtgaggtagtaggttgtatagttttagggt 32
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||||| |||| ||||||
Sbjct: 2 ggtgaggtagtaggttgtatagttttagggt 32
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||||| |||| ||||||
Sbjct: 10 ggtgaggtagtaggttgtatagttttagggt 40
>24643_bfl-let-7b:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gaggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||||| ||||
Sbjct: 82 gaggtgaggtagtaggttgtatagtt 57
>25874_gga-let-7f:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 gtgaggtagtaggttgtaaagttgtagggt 36
|||||||||||| ||||| |||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtagggt 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttgtaggg 35
||||||||||||||||||| |||| |||||
Sbjct: 9 ggtgaggtagtaggttgtatagttttaggg 38
>26378_tgu-let-7a-4:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gaggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||||| ||||
Sbjct: 7 gaggtgaggtagtaggttgtatagtt 32
>26384_tgu-let-7f:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 gtgaggtagtaggttgtaaagttgtagggt 36
|||||||||||| ||||| |||||||||||
Sbjct: 10 gtgaggtagtagattgtatagttgtagggt 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 59 ggagataactatacaatctattgccttc 86
>34178_dre-let-7f:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 gtgaggtagtaggttgtaaagttgtagggt 36
|||||||||||| ||||| |||||||||||
Sbjct: 19 gtgaggtagtagattgtatagttgtagggt 48
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 13 tgaggtagtaggttgtatagttttagggt 41
>26377_tgu-let-7a-3:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 61 tgaggtagtaggttgtatagttttagggt 89
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 15 tgaggtagtaggttgtatagttttagggt 43
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 6 tgaggtagtaggttgtatagttttagggt 34
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 6 tgaggtagtaggttgtatagttttagggt 34
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 5 tgaggtagtaggttgtatagttttagggt 33
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 6 tgaggtagtaggttgtatagttttagggt 34
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 13 tgaggtagtaggttgtatagttttagggt 41
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 13 tgaggtagtaggttgtatagttttagggt 41
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 6 tgaggtagtaggttgtatagttttagggt 34
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 11 tgaggtagtaggttgtatagttttagggt 39
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||| |||| ||||||
Sbjct: 11 tgaggtagtaggttgtatagttttagggt 39
>34169_dre-let-7a-5:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 aggtgaggtagtaggttgtaaagtt 29
|||||||||||||||||||| ||||
Sbjct: 25 aggtgaggtagtaggttgtatagtt 49
>34170_dre-let-7a-6:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 aggtgaggtagtaggttgtaaagtt 29
|||||||||||||||||||| ||||
Sbjct: 26 aggtgaggtagtaggttgtatagtt 50
>34527_fru-let-7a-3:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 aggtgaggtagtaggttgtaaagtt 29
|||||||||||||||||||| ||||
Sbjct: 3 aggtgaggtagtaggttgtatagtt 27
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttg 30
||||||||||||||||||| |||||
Sbjct: 4 ggtgaggtagtaggttgtatagttg 28
>34675_tni-let-7a-3:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 aggtgaggtagtaggttgtaaagtt 29
|||||||||||||||||||| ||||
Sbjct: 3 aggtgaggtagtaggttgtatagtt 27
>34862_sko-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttg 30
||||||||||||||||||| |||||
Sbjct: 19 ggtgaggtagtaggttgtatagttg 43
>38484_crm-let-7:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 25 ggtgaggtagtaggttgtatagtt 48
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 9 ggtgaggtagtaggttgtatagtt 32
>26610_cfa-let-7f:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 49 ggagataactatacaatctattgccttc 76
>26930_eca-let-7a-2:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 2 ggtgaggtagtaggttgtatagtt 25
>26934_eca-let-7f:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>27320_mdo-let-7a-3:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 3 ggtgaggtagtaggttgtatagtt 26
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>27631_mml-let-7a-3:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 2 ggtgaggtagtaggttgtatagtt 25
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>28341_hsa-let-7a-3:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 2 ggtgaggtagtaggttgtatagtt 25
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>30128_ptr-let-7a-3:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 1 ggtgaggtagtaggttgtatagtt 24
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 54 ggagataactatacaatctattgccttc 81
>30733_ppy-let-7a-3:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 2 ggtgaggtagtaggttgtatagtt 25
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>31413_oan-let-7f-1:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 79 ggagataactatacaatctattgccttc 106
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 56 ggagataactatacaatctattgccttc 83
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 56 ggagataactatacaatctattgccttc 83
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 38 ggagataactatacaatctattgccttc 11
>33110_bta-let-7a-3:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 2 ggtgaggtagtaggttgtatagtt 25
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 ggagataactgtacaacctattgccttc 86
|||||||||| ||||| |||||||||||
Sbjct: 55 ggagataactatacaatctattgccttc 82
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tggagataactgtacaacct 77
||||||||||||||||||||
Sbjct: 47 tggagataactgtacaacct 66
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 16 ggtgaggtagtaggttgtatagtt 39
>34958_isc-let-7:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 gtgaggtagtaggttgtaaagttg 30
|||||||||||||||||| |||||
Sbjct: 20 gtgaggtagtaggttgtatagttg 43
>38123_cbr-let-7:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 11 ggtgaggtagtaggttgtatagtt 34
>38263_cel-let-7:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||| ||||
Sbjct: 15 ggtgaggtagtaggttgtatagtt 38
