miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34211_dre-mir-18a:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
||||||||||||||||||||||||||||||
Sbjct: 5 ttgtgctaaggtgcatctagtgcagatagt 34
>34550_fru-mir-18:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
||||||||||||||||||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagt 30
>34698_tni-mir-18:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
||||||||||||||||||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagt 30
>25434_pma-mir-18b:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 4 gtgcttgcttgtgctaaggtgcatctagtgcagatagt 41
||||||||||||| ||||||||| |||||||||||||
Sbjct: 1 gtgcttgcttgtgtaaaggtgcatttagtgcagatagt 38
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 8 ttgtcctaaggtgcatctagtgcagatagt 37
>25899_gga-mir-18a:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 8 ttgtactaaggtgcatctagtgcagatagt 37
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 5 ttgtactaaggtgcatctagtgcagatagt 34
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 8 ttgttctaaggtgcatctagtgcagatagt 37
>27337_mdo-mir-18:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 1 ttgttctaaggtgcatctagtgcagatagt 30
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 11 ttgttctaaggtgcatctagtgcagatagt 40
>32664_rno-mir-18a:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 11 ttgttctaaggtgcatctagtgcagatagt 40
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ttgtgctaaggtgcatctagtgcagatagt 41
|||| |||||||||||||||||||||||||
Sbjct: 8 ttgttctaaggtgcatctagtgcagatagt 37
>27483_age-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>27544_lla-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>27592_sla-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>27656_mml-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>28175_mne-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>28263_ggo-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>30047_ppa-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>30757_ppy-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>31397_lca-mir-18:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>33134_bta-mir-18a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 ctaaggtgcatctagtgcagatagt 41
|||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagt 29
>34212_dre-mir-18b:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tgcttgtgctaaggtgcatctagtgcagatagt 41
||||| ||||||||||||| |||||||||||||
Sbjct: 4 tgcttatgctaaggtgcatttagtgcagatagt 36
>26950_eca-mir-18a:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 taaggtgcatctagtgcagatagt 41
||||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagt 24
>25656_xla-mir-18:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 2 cttgtgttaaggtgcatctagtgcagttagt 32
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 2 cttgtgttaaggtgcatctagtgcagttagt 32
>25900_gga-mir-18b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 8 cttgtgttaaggtgcatctagtgcagttagt 38
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 94 cttgtgttaaggtgcatctagtgcagttagt 124
>31432_oan-mir-18:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 22 cttgtgttaaggtgcatctagtgcagttagt 52
>33135_bta-mir-18b:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 1 cttgtgttaaggtgcatctagtgcagttagt 31
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgcagatagt 41
|||||| ||||||||||||||||||| ||||
Sbjct: 4 cttgtgttaaggtgcatctagtgcagttagt 34
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tgtgctaaggtgcatctagtgcagatagt 41
|||| ||||||||||||||||||| ||||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagt 31
>27657_mml-mir-18b:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tgtgctaaggtgcatctagtgcagatagt 41
|||| ||||||||||||||||||| ||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagt 29
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tgtgctaaggtgcatctagtgcagatagt 41
|||| ||||||||||||||||||| ||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagt 29
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tgtgctaaggtgcatctagtgcagatagt 41
|||| ||||||||||||||||||| ||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagt 29
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tgtgctaaggtgcatctagtgcagatagt 41
|||| ||||||||||||||||||| ||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagt 29
>26951_eca-mir-18b:mirbase
Length = 59
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 taaggtgcatctagtgcagatagt 41
||||||||||||||||||| ||||
Sbjct: 1 taaggtgcatctagtgcagttagt 24
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 cttgtgctaaggtgcatctagtgc 34
|||||| |||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgc 27
