miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacagaagtctcgtcca 91
||||||||||||||||||||||||| ||||| |||||
Sbjct: 77 cactggctcagttcagcaggaacaggagtctggtcca 113
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 gcactggctcagttcagcaggaacagaagtc 84
|||||||||||||||||||||||||| ||||
Sbjct: 57 gcactggctcagttcagcaggaacaggagtc 87
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 54 gcactggctcagttcagcaggaacagaagtc 84
|||||||||||||||||||||||||| ||||
Sbjct: 37 gcactggctcagttcagcaggaacaggagtc 7
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 54 gcactggctcagttcagcaggaacagaagtc 84
|||||||||||||||||||||||||| ||||
Sbjct: 37 gcactggctcagttcagcaggaacaggagtc 7
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 gcactggctcagttcagcaggaacagaagtc 84
|||||||||||||||||||||||||| ||||
Sbjct: 57 gcactggctcagttcagcaggaacaggagtc 87
>26413_tgu-mir-24:mirbase
Length = 132
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 98 cactggctcagttcagcaggaacaggagtc 127
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacagaagtct 85
|||||||||||||||||||||||| |||||
Sbjct: 44 actggctcagttcagcaggaacaggagtct 73
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 34 cactggctcagttcagcaggaacaggagtc 5
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 34 cactggctcagttcagcaggaacaggagtc 5
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtc 7
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtc 7
>33024_rno-mir-3074:mirbase
Length = 117
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 49 cactggctcagttcagcaggaacaggagtc 20
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 49 cactggctcagttcagcaggaacaggagtc 78
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacagaagtc 84
||||||||||||||||||||||||| ||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacag 64
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacag 64
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 37 cactggctcagttcagcaggaacag 61
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>28270_ggo-mir-24:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacag 64
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>31442_oan-mir-24:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacag 73
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacag 65
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacag 71
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcaggaacag 79
|||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacag 70
>25908_gga-mir-24:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacag 65
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacag 61
>26961_eca-mir-24:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacag 65
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacag 71
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacag 72
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacag 75
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 actggctcagttcagcaggaacag 79
||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacag 75
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ctggctcagttcagcaggaacag 79
|||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacag 77
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ctggctcagttcagcaggaacag 79
|||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacag 72
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ctggctcagttcagcaggaacag 79
|||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacag 72
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 cactggctcagttcagcagga 75
|||||||||||||||||||||
Sbjct: 37 cactggctcagttcagcagga 57
